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= [[OpenOntologyRepository]]: Architecture & API Workshop-XI - Tue 2012_03_20 =
= [[OpenOntologyRepository]]: OOR Team Conference Call - Tue 2012_04_03 =


'''''Attention!''''' ... Please note start-time of the meeting, timing these couple of weeks is fairly tricky (especially for non-US participants) - as North America has gone into daylight saving time, Europe hasn't, and a lot of Asian countries don't do daylight saving at all!
This is a regular OOR Team meeting. ... ''please refer also to proceedings from the last team meeting at [[OOR/ConferenceCall_2012_03_13]]''  
 
Topic: "'''OOR Architecture & API Specification Development Workshop-XI'''"
 
Session Co-chairs: '''Professor [[User:KennethBaclawski|Ken Baclawski]] & Dr. ToddSchneider'''  


=== [[MeetingsCalls|Conference Call]] Details  ===
=== [[MeetingsCalls|Conference Call]] Details  ===


* Date: '''Tuesday, 20-Mar-2012'''  
* Date: '''Tuesday, 3-Apr-2012'''  
* Start Time: 8:30am PDT / 11:30am EDT / 4:30pm CET / 15:30 UTC  
* Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 4:30pm GMT / 15:30 UTC  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=3&day=20&year=2012&hour=8&min=30&sec=0&p1=224 World Clock]  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=4&day=3&year=2012&hour=8&min=30&sec=0&p1=224 World Clock]  
* Expected Call Duration: ~1.5 hours  
* Expected Call Duration: 1.0~1.5 hours  


* Dial-in:  
* Dial-in:  
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** view-only password: "ontolog"  
** view-only password: "ontolog"  
** if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.  
** if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.  
** people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the '''[ presentation(s)]''' (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.  
** people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the '''[ slides]''' (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.  
 
* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20120320
** instructions: once you got access to the page, click on the "settings" button, and identify yourself (by modifying the Name field from "anonymous" to your real name, like "JaneDoe").
** You can indicate that you want to ask a question verbally by clicking on the "hand" button, and wait for the moderator to call on you; or, type and send your question into the chat window at the bottom of the screen.
** thanks to the soaphub.org folks, one can now use a jabber/xmpp client (e.g. gtalk) to join this chatroom. Just add the room as a buddy - (in our case here) oor_20120320@soaphub.org ... Handy for mobile devices!
 
* '''Discussions and Q & A:'''
** Nominally, when a presentation is in progress, the moderator will mute everyone, except for the speaker.
** '''To un-mute, press "*7"''' ... '''To mute, press "*6"''' (please mute your phone, especially if you are in a noisy surrounding, or if you are introducing noise, echoes, etc. into the conference line.)
** we will usually save all questions and discussions till after all presentations are through. You are encouraged to jot down questions onto the chat-area in the mean time (that way, they get documented; and you might even get some answers in the interim, through the chat.)
** During the Q&A / discussion segment (when everyone is muted), '''If you want to speak''' or have questions or remarks to make, '''please raise your hand''' (virtually) '''by clicking on the "hand button"''' (lower right) on the chat session page. You may speak when acknowledged by the session moderator (again, press "*7" on your phone to un-mute). ''Test your voice and introduce yourself first before proceeding with your remarks, please.'' (Please remember to click on the "hand button" again (to lower your hand) and press "*6" on your phone to mute yourself after you are done speaking.)


* Please review our Virtual Session Tips and Ground Rules - see: [[VirtualSpeakerSessionTips]]
* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20120403


* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  
* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  


* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_03_20
* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_04_03


* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
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* Attended:  
* Attended:  
** [[User:KennethBaclawski|Ken Baclawski]] (co-chair)
** [[User:KennethBaclawski|Ken Baclawski]]  
** [[ToddSchneider|Todd Schneider]] (co-chair)
** [[MichaelGruninger|Michael Grüninger]]  
** [[PeterYim|Peter P. Yim]]  
** [[PeterYim|Peter P. Yim]] (chair)
** [[TillMossakowski|Till Mossakowski]]  
** [[TillMossakowski|Till Mossakowski]]  
** [[MikeDean|Mike Dean]]


* Expecting:  
* Expecting:  
*   
*   
** ... ''if you are coming to the meeting, please add your name (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  


* Regrets:  
* Regrets:  
** [[MichaelGruninger|Michael Gr&uuml;ninger]]  
** [[ToddSchneider|Todd Schneider]]
** [[ToddSchneider|Todd Schneider]] (can only stay for half-an-hour)
** [[MikeDean|Mike Dean]]  
** [[TimDarr|Tim Darr]]  
** ...  
** ...  


=== Session Abstract & Resources ===
== Agenda Ideas ==


At this "OOR Architecture & API" series of meetings, we are going through the process of producing the actual OOR specification. It will be run as a workshop where the straw man proposal will be discussed and modified as needed.
''please insert any additional items below (along with your name for follow-up purposes)''


The various architectures and APIs for ontology repositories presented for consideration are available at [[OpenOntologyRepository_Architecture]]  
* postmortem of the last couple of workshops (Architecture-API-XI & Ontohub)
** Architecture-API-XI - [[OOR/ConferenceCall_2012_03_20]]
** Ontohub - [[OOR/ConferenceCall_2012_03_27]]
* OOR: sandbox, devbox, test-instance, socop, colore, new ncbo-appliance, ... status update
* previous action item status review
* planning and coordination on upcoming OOR events
* OOR presence at the [[OntologySummit2012_Symposium]]  
* Member activities updates
* action planning for "content drive" (getting people to upload ontologies)
* Getting us to a stage when we can run a OOR-production box
* ...


Here is the status of the strawman architecture: [[OpenOntologyRepository_Architecture/Candidate03]]
== Agenda & Proceedings  ==


In addition, there is an API of the core services that was obtained from anearlier implementation [[BioPortal]], which is not entirely compatible with the straw man architecture, but furnishes a starting point. This API will also be discussed and modified as needed.  
'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/ Archives]:'''


* Here is the API expressed in WSDL: http://www.ccs.neu.edu/home/kenb/oor/OORService.wsdl
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/OOR-team-conf-call_20120403b.mp3 audio recording of the session] [ 0:29:53 ; mp3 ; 3.42 MB ]
* Here is the API expressed in Java: http://www.ccs.neu.edu/home/kenb/oor/OORI.java
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/chat-transcript_oor-team_20120403b.txt chat-transcript of this session]


Finally, we need to agree on a plan for completing the development of the specification.
1. Meeting called to order:


Here is the proposed organizing plan: '''[[OpenOntologyRepository_Architecture/GettingOrganized]]'''
* [[PeterYim|Peter P. Yim]] takes the chair and welcome everyone
* [[PeterYim|Peter P. Yim]] volunteered to take notes
* review and adopt agenda


We encourage all participants to update your candidate contributions to ensure your ideas are known and understood.  
2. Roll Call:


The following are relevant prior meetings:  
* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_04_03#nid3912 above]


* Architecture & API Specification Development Workshop-XI - [[OOR/ConferenceCall_2012_03_20]] '' (this session)''
* welcome and intro of new member(s) (if applicable)  
* Architecture & API Specification Development Workshop-X - [[OOR/ConferenceCall_2012_01_31]]
* Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies" - [[OOR/ConferenceCall_2011_11_29]]
* Architecture & API Specification Development Workshop-VIII - [[OOR/ConferenceCall_2011_10_11]]
* Architecture & API Specification Development Workshop-VII - [[OOR/ConferenceCall_2011_09_20]]
* Kicking-off the Next Phase of OOR-NCBO Collaboration - [[OOR/ConferenceCall_2011_09_13]]
* Architecture & API Specification Development Workshop-VI - [[OOR/ConferenceCall_2011_06_17]]
* Architecture & API Specification Development Workshop-V - [[OOR/ConferenceCall_2011_05_20]]
* Architecture & API Specification Development Workshop-IV - [[OOR/ConferenceCall_2011_04_22]]
* Architecture & API Specification Development Workshop-III - [[OOR/ConferenceCall_2011_03_25]]
* Architecture & API Specification Development Workshop-II - [[OOR/ConferenceCall_2011_03_11]]
* Architecture & API Specification Development Workshop-I - [[OOR/ConferenceCall_2011_03_04]]
* [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_02_04#nid2MIV 2011.02.04 discussion]
* 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[MichaelGruninger|Michael Gr&uuml;ninger]] - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2010_11_19]]
* 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - [[OOR/ConferenceCall_2010_10_15]]


== Agenda Ideas  ==
3. Status Review and Discussion:


* Discussion
* '''Review and update our "Most Critical Task(s) At Hand" list''' ... ''(discussion deferred)''
** the OOR Architecture
** ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH
** the OOR API
** the Organizing Plan
** moving from OOR sandbox to OOR production
 
== Agenda & Proceedings  ==


[http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/ Archives]:
=== 4. Key items for review and discussion today  ===


* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/OOR_Architecture-API-workshop-XI_20120320b.mp3 Audio archive of the session] ... [ 0:58:21 ; mp3 ; 6.7 MB ]  
* '''postmortem of the last couple of workshops (Architecture-API-XI & Ontohub)''' ... ''(discussion deferred)''
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/chat-transcript_20120320b.txt Chat transcript of the session]  
** Architecture-API-XI - [[OOR/ConferenceCall_2012_03_20]]  
** Ontohub - [[OOR/ConferenceCall_2012_03_27]]  


1. Meeting called to order:  
* '''OOR status update: sandbox, devbox, test-instance, socop, colore, new ncbo-appliance, ... '''
** OOR-01 - (old instance, being retired) re-direct to homepage ... ''(coming!)''
** OOR-02 - ci server
** OOR-03 - sandbox - http://sandbox.oor.net
** OOR-04 - socop - http://socop.oor.net
** OOR-05 - devbox - http://dev.oor.net
** OOR-06 - test-00 - http://test-00.oor.net
** OOR-07 - new instance - ncbo-applicance-0.5 ... ''(coming!)''
** recruiting and justifying the network of oor.net repository instances
*** ontohub.oor.net -> http://ontohub.informatik.uni-bremen.de/
**** Till agrees to the above. Peter will implement.


* [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] took the chair and welcome everyone
* '''previous action item status review'''
** [action-2012.03.13] Michael will try to get [[MikeBennett|Mike Bennett]] to upload his ontology to OOR
** [action-2012.03.13] Peter trying to get ORNL-DACC and MMI to become part of the federation and run with a __.oor.net cname
** [action-2012.03.13] [[MikeDean|Mike Dean]] will talk to the SOCoP people about doing a demo at the symposium - ref. Michael's call - http://ontolog.cim3.net/forum/ontology-summit/2012-03/msg00059.html
** [action-2012.03.13] Ken will continue to work on implementing "gatekeeping" (and get back with an ETA) so we can move from "sandbox" to "production"


* [[PeterYim|Peter P. Yim]] volunteered to keep a record of the proceedings
* '''planning and coordination on upcoming OOR events'''
** 2012_04_10 - no meeting; [[OntologySummit2012_Symposium]] on 4/12 & 4/13
** 2012_04_12~13 - see discussion below on OOR presence at the [[OntologySummit2012_Symposium]]
** 2012_04_17 - no meeting; [[OntologySummit2012_Symposium]] on 4/12 & 4/13
** 2012_04_24 - Tuesday: OOR Metadata Workshop-VII: "Metadata in Ontology Mapping" - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2012_04_24]]
*** candidate panelists: ontoiop, bioportal, ontology mapping community,
*** ... later, OOR-Metadata panel session on "Federation"
** 2012_05_01 - Tuesday: OOR Project Team Member Conference Call - [[OOR/ConferenceCall_2012_05_01]]  
** next workshops
*** Architecture-API-XII - Tue 2012.05.08
*** Metadata-VIII - will try to fix a date on 4/24 during the "Metadata in Ontology Mapping" session [Michael]
*** OOR-Dev-VIII - ??
*** OOR-Content-II - ??
**** look back at the [[PatCassidy|Pat Cassidy]] + [[DeniseBedford|Denise Bedford]] "OOR-Content-I" session - [[OOR/ConferenceCall_2010_03_12]]


* review and adopt agenda
... ''Notes below are from previous meeting(s), and will be updated as this meeting progresses.''


2. Roll Call & Adoption of last meeting's minutes:  
* '''OOR presence at the [[OntologySummit2012_Symposium]]'''
** OOR presentation? [Todd]
*** Regarding the [[OntologySummit|Ontology Summit]] and OOR, one issue that appears
in many of the summit presentations to date is infrastructure.
OOR being part of said infrastructure (as will be represented
in the communique) will be included.
** semantified summit content access [AliHashemi, [[JieBao|Jie Bao]], [[YingjieLi|Yingjie Li]], PeterYim)
*** aiming to demo something during the [[OntologySummit2012_Symposium]] - summit content on purple semantic mediawiki, slideshare, that makes use of an ontology that will be hosted on OOR  ... ''(being planned!)''
** [action] [[MikeDean|Mike Dean]] will talk to the SOCoP people about doing a demo at the sympoisum - ref. Michael's call - http://ontolog.cim3.net/forum/ontology-summit/2012-03/msg00059.html


* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_03_20#nid37JF above]
'''Member activities updates:''' ... ''(discussion deferred)''
* introduction of new members (as required)  
* review of agenda


3. '''Key items for review and discussion''' today:
* Review: members and OOR-related activities (2012.02.07)
** OOR-sandbox status
** code repository status
** NCBO
** NEU
** Raytheon-BBN
** UToronto
** Bremen
** Ryerson
** Mathet
** [[SOCoP_INTEROP]]
** [[DataONE]]
** [[NeOn]] (KMi and STL)
** ONKI
** KBSI
** MMI
** Use Cases
** Architecture
** API
** Gatekeeping
** production OOR instance
** SIO
** ICOM / DERI
** [[OntoIOp]]
** [[OntologySummit2012|Ontology Summit 2012]]
** content drive
** Funding


* Announcements and Urgent Matters:
* '''action planning for "content drive"''' (getting people to upload ontologies)
** ...


''... items below are mostly from the previous workshop, and will be updated as this session progresses.''  
* '''Getting us to a stage when we can run a OOR-production box'''
** ''(discussion 2011.05.06):''
*** an adopted Architecture & API is definitely crucial, but that's not all
** All team members are encouraged to mull over how we can get to that state effectively
*** in particular ... how do we make this a "successful" community-driven, open source project!?
** (discussion 2011.06.03)'' ...


* Review of action item(s) from the previous meeting(s)
* code development on an Eclipse IDE for all?


* '''"OOR Architecture & API Specification Development Workshop-VIII:"''' ([http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/ Archives])
* Code repository - considering "git" or github?


* Gatekeeping specifies the a set of minimal requirements that any ontology within the OOR has to meet. The latter are intended to enable the users of the OOR to find quickly ontologies that fit their needs; the criteria are not supposed to ensure the quality of the ontologies.
5. '''Funding progress:'''
** Each OOR instance declares what ontology languages it supports.
** Every OOR instance MUST support RDFS.
*** This is required because the metadata is expressed in OMV.
*** OMV is written in OWL, but it may be sufficient to require only RDFS. This needs to be investigated.
** Other ontology languages MAY be supported.
** For each metadata attribute, it will be specified whether it is required or optional.
*** It MUST be specified whether the ontology is available (or to be available in the future).
*** The ontology language MUST be specified.
*** Other attributes will be handled offline by [[MichaelGruninger|Michael Gr&uuml;ninger]] based on the OMV specification.
** An ontology must satisfy other requirements depending on the ontology language.
*** Syntax checking is always required.
*** Consistency checking is required with some time limit.  


* Proposal for Partition of Components
6. '''Any Other Business:'''
** Presentation
*** A minimal presentation module with just search and workflow
*** Browse (already in BioPortal-based sandbox)
*** Search (already in BioPortal-based sandbox)
*** Mapping (already in BioPortal-based sandbox)
*** Recommender (already in BioPortal-based sandbox)
*** Annotator (already in BioPortal-based sandbox)
*** Resource Index (already in BioPortal-based sandbox)
*** Workflow Administration
*** OOR Instance Administration
*** Other windows
** Workflow
*** Already developed, but needs to be documented
** Registrar
*** A minimal registrar
** Find
*** Initially adapt a SPARQL endpoint. Which one?
** Inference
*** Initially a part of the SPARQL endpoint
*** Other inference engines
** Persistence
*** Initially adapt 4Store
** Administration
*** TBD
** Federation
*** TBD


* '''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/chat-transcript_20120320b.txt Chat transcript of this session]'''.
7. '''Action items:'''  


'''Consensus, Conclusions & Follow-up Actions:'''
8. Schedule Next Meeting & Adjourn:  


* [[User:KennethBaclawski|Ken Baclawski]]: To deal with visualization of other ontology languages, there should be a visualization mapping mechanism (e.g., an automated way to extract the concepts and relationships from the ontology) that can use the existing visualization software or a visualization plugin capability that allows one to introduce an entirely new visualization.
* No OOR calls next two weeks as the [[OntologySummit2012_Symposium]] will be in session Apr-12 & 13 - Join us there!
** register your attendance if you haven't already done so! - [[OntologySummit2012/WorkshopRegistration]]
* Next Meetings:
** next Metadata workshop (VII) on Tue 2012.04.24 - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]]
** 2012_05_01 - next Regular OOR Team meeting - first Tuesday of the month - [[OOR/ConferenceCall_2012_05_01]]
** 2012_05_08 - Architecture-API-XII - Tue 2012.05.08 - Co-chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]]


4. '''Any Other Business:'''
* Call adjourned at: 9:04 am PDT  
 
5. '''Action items:'''
 
6. Schedule Next Meeting & Adjourn:
 
* Next Meeting:
** we will hear from the Bremen folks on their recent "Ontohub" development effort - [ Tue 2012.03.27 ]
** next regular OOR team meeting next week - Tue 2012.04.03 same time - [ Tue 2012.04.03 ]
*** [[MikeDean|Mike Dean]]: I'll probably have to miss that meeting, as I will be traveling.
** we'll plan other events at that meeting
 
* Call adjourned at: 9:31 am PDT  


--
--


notes taken by: [[PeterYim|Peter P. Yim]] / 2012.03.20-11:47am PDT
notes taken by: [[PeterYim|Peter P. Yim]] / 2012.04.03-9:06am PDT


All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
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** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[DougLenat|Doug Lenat]], [[DekeSmith|Deke Smith]], [[MarciaZeng|Marcia Zeng]], [[DeniseBedford|Denise Bedford]], [[PatHayes|Pat Hayes]], [[MalaMehrotra|Mala Mehrotra]] & [[RobRaskin|Rob Raskin]] - ConferenceCall_2008_04_03  
** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[DougLenat|Doug Lenat]], [[DekeSmith|Deke Smith]], [[MarciaZeng|Marcia Zeng]], [[DeniseBedford|Denise Bedford]], [[PatHayes|Pat Hayes]], [[MalaMehrotra|Mala Mehrotra]] & [[RobRaskin|Rob Raskin]] - ConferenceCall_2008_04_03  
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Gr&uuml;ninger]]; Panelists: [[MichaelGruninger|Michael Gr&uuml;ninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Gr&uuml;ninger]]; Panelists: [[MichaelGruninger|Michael Gr&uuml;ninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10  
* the '''OOR Development panel sessions''':  
* the '''OOR Development panel sessions''':  
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst|Leo Obrst]]; Panelists: [[MikeDean|Mike Dean]], Mark Musen, [[LiDing|Li Ding]], [[Bargmeyer|Bruce Bargmeyer]] & [[BillAndersen|Bill Andersen]] - ConferenceCall_2008_08_22  
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst|Leo Obrst]]; Panelists: [[MikeDean|Mike Dean]], Mark Musen, [[LiDing|Li Ding]], [[Bargmeyer|Bruce Bargmeyer]] & [[BillAndersen|Bill Andersen]] - ConferenceCall_2008_08_22  
Line 239: Line 237:
** 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: [[RayFergerson|Ray Fergerson]] & [[PeterYim|Peter P. Yim]] - [[OOR/ConferenceCall_2011_09_13]]  
** 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: [[RayFergerson|Ray Fergerson]] & [[PeterYim|Peter P. Yim]] - [[OOR/ConferenceCall_2011_09_13]]  
** 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Discussant: [[RayFergerson|Ray Fergerson]] - [[OOR/ConferenceCall_2011_11_29]]  
** 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Discussant: [[RayFergerson|Ray Fergerson]] - [[OOR/ConferenceCall_2011_11_29]]  
** 2012_03_27 - Tuesday: OOR presentation: "Ontohub: an OOR-compliant Repository for Distributed Ontologies" - Chair: [[TillMossakowski|Till Mossakowski]] - [[OOR/ConferenceCall_2012_03_27]]


*   
*   
Line 304: Line 303:
* '''Public instances of OOR - http://sandbox.oor.net/ontologies''' (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:  
* '''Public instances of OOR - http://sandbox.oor.net/ontologies''' (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:  
** '''[[OOR_SandBox]]''' - http://oor-03.cim3.net - http://sandbox.oor.net/  
** '''[[OOR_SandBox]]''' - http://oor-03.cim3.net - http://sandbox.oor.net/  
** '''[[OOR_DevBox]]''' - http://oor-01.cim3.net - http://dev.oor.net/  
** '''[[OOR_DevBox]]''' - http://oor-05.cim3.net - http://dev.oor.net/
** '''OOR Test instance''' - http://oor-06.cim3.net - http://test-00.oor.net/  
*** see also: '''[[OOR_SandBox_Customization]]'''  
*** see also: '''[[OOR_SandBox_Customization]]'''  
** '''SOCoP[http://socop.oor.net/ _OOR]''' - http://oor-04.cim3.net - http://socop.oor.net/  
** '''SOCoP[http://socop.oor.net/ _OOR]''' - http://oor-04.cim3.net - http://socop.oor.net/ontologies
** '''COLORE[http://code.google.com/p/colore/source/browse/#svn%2Ftrunk%2Fontologies _OOR] - http://code.google.com/p/colore/source/browse/#svn%2Ftrunk%2Fontologies
** '''[[NCBO]] - [http://bioportal.bioontology.org/ BioPortal]'''  
** '''[[NCBO]] - [http://bioportal.bioontology.org/ BioPortal]'''  
*** BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support  
*** BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support  

Latest revision as of 07:35, 9 January 2016

OpenOntologyRepository: OOR Team Conference Call - Tue 2012_04_03

This is a regular OOR Team meeting. ... please refer also to proceedings from the last team meeting at OOR/ConferenceCall_2012_03_13

Conference Call Details

  • Date: Tuesday, 3-Apr-2012
  • Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 4:30pm GMT / 15:30 UTC
  • Expected Call Duration: 1.0~1.5 hours
  • Dial-in:
    • Phone (US): +1 (206) 402-0100 (long distance cost may apply)
      • ... [ backup nbr: (415) 671-4335 ]
    • Skype: joinconference ... free-of-charge if you connect through skype from your computer/device with an Internet connection)
    • when prompted enter PIN: 141184#
  • Shared-screen support (VNC session), if applicable, will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/
    • view-only password: "ontolog"
    • if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.
    • people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the [ slides] (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.
  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.

Attendees

  • Expecting:
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...

Agenda Ideas

please insert any additional items below (along with your name for follow-up purposes)

  • postmortem of the last couple of workshops (Architecture-API-XI & Ontohub)
  • OOR: sandbox, devbox, test-instance, socop, colore, new ncbo-appliance, ... status update
  • previous action item status review
  • planning and coordination on upcoming OOR events
  • OOR presence at the OntologySummit2012_Symposium
  • Member activities updates
  • action planning for "content drive" (getting people to upload ontologies)
  • Getting us to a stage when we can run a OOR-production box
  • ...

Agenda & Proceedings

Archives:

1. Meeting called to order:

2. Roll Call:

  • welcome and intro of new member(s) (if applicable)

3. Status Review and Discussion:

4. Key items for review and discussion today

  • previous action item status review
    • [action-2012.03.13] Michael will try to get Mike Bennett to upload his ontology to OOR
    • [action-2012.03.13] Peter trying to get ORNL-DACC and MMI to become part of the federation and run with a __.oor.net cname
    • [action-2012.03.13] Mike Dean will talk to the SOCoP people about doing a demo at the symposium - ref. Michael's call - http://ontolog.cim3.net/forum/ontology-summit/2012-03/msg00059.html
    • [action-2012.03.13] Ken will continue to work on implementing "gatekeeping" (and get back with an ETA) so we can move from "sandbox" to "production"

... Notes below are from previous meeting(s), and will be updated as this meeting progresses.

in many of the summit presentations to date is infrastructure. OOR being part of said infrastructure (as will be represented in the communique) will be included.

Member activities updates: ... (discussion deferred)

  • Review: members and OOR-related activities (2012.02.07)
    • OOR-sandbox status
    • code repository status
    • NCBO
    • NEU
    • Raytheon-BBN
    • UToronto
    • Bremen
    • Ryerson
    • Mathet
    • SOCoP_INTEROP
    • DataONE
    • NeOn (KMi and STL)
    • ONKI
    • KBSI
    • MMI
    • Use Cases
    • Architecture
    • API
    • Gatekeeping
    • production OOR instance
    • SIO
    • ICOM / DERI
    • OntoIOp
    • Ontology Summit 2012
    • content drive
    • Funding
  • action planning for "content drive" (getting people to upload ontologies)
  • Getting us to a stage when we can run a OOR-production box
    • (discussion 2011.05.06):
      • an adopted Architecture & API is definitely crucial, but that's not all
    • All team members are encouraged to mull over how we can get to that state effectively
      • in particular ... how do we make this a "successful" community-driven, open source project!?
    • (discussion 2011.06.03) ...
  • code development on an Eclipse IDE for all?
  • Code repository - considering "git" or github?

5. Funding progress:

6. Any Other Business:

7. Action items:

8. Schedule Next Meeting & Adjourn:

  • Call adjourned at: 9:04 am PDT

--

notes taken by: Peter P. Yim / 2012.04.03-9:06am PDT

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.

Resources

  • the OOR-IPR mini-series:
    • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
    • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
    • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
  • the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
    • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
    • 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: Elisa Kendall on "Ontology-Related Metadata Standards" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_11_03



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