Ontolog Forum
OpenOntologyRepository: OOR Team Conference Call - Tue 2011_12_06
This is a regular OOR Team meeting. ... please refer to proceedings from the last team meeting at OOR/ConferenceCall_2011_11_01
Conference Call Details
- Date: Tuesday, 6-Dec-2011
- Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
- ref: World Clock
- Expected Call Duration: 1.0~1.5 hours
- Dial-in:
- Phone (US): +1 (206) 402-0100 (long distance cost will apply)
- Skype: joinconference
- when prompted enter PIN: 141184#
- In-session chat-room url: http://webconf.soaphub.org/conf/room/oor_20111206
- RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
- This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_12_06
- Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.
Attendees
- Attended:
- Expecting:
-
- ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...
- Regrets:
Agenda Ideas
please insert any additional items below (along with your name for follow-up purposes)
- OOR-sandbox status update
- post-mortem of recent OOR sessions
- Member activities updates
- planning and coordination on upcoming OOR events
- Getting us to a stage when we can run a OOR-production box
- action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding)
- action planning for "soliciting" content (getting people to upload ontologies)
- ...
Agenda & Proceedings
- audio recording of the session [ 1:13:15 ; mp3 ; 8.4 MB ]
- [ chat-transcript of this session] (... no pertinent chat content for this call)
1. Meeting called to order:
- Mike Dean takes the chair and welcome everyone
- review and adopt agenda
- Peter P. Yim volunteered to take notes
2. Roll Call:
- see above
- welcome and intro of new member(s) (as needed)
3. Status Review and Discussion:
- Review and update our "Most Critical Task(s) At Hand" list ...(we will skip this stock agenda item at today's call.)
4. Key items for review and discussion today
- OOR-sandbox, devbox and socop-box status update ... below
- Peter reported status of the OOR-sandbox install issues, which should be close to being resolved
- Mike Dean reported back on the SOCoP events last week
- Geospatial Data Semantic Interoperability session at SemTech East
- Nancy presented on the SOCoP-INTEROP project
- Mike presented and showed screenshots of SOCoP-OOR
- lots of discussion
- SocopWorkshop2011 at USGS (Reston, Washington DC Area, 2011.12.02)
- Nancy presented on the SOCoP-INTEROP project
- Mike presented on OOR and showed a live demo of SOCoP-OOR with more ontologies using ncbo-appliance-0.3 on his laptop
- USGS has a GeoSPARQL end point. See http://cegis.usgs.gov/ontology.html
- upcoming events
- SOCoP will be presenting at the NSF INTEROP PI Meeting in Indianapolis, January 25-27, 2012 ... hope the OORs will be up by then (early enough for prep work, obviously)
- GeoVoCamp Santa Barbara 2012 will be held Feb 3-5, 2012
- Geospatial Data Semantic Interoperability session at SemTech East
- post-mortem of recent OOR sessions
- "Ontologies and Standards" mini-series session-1 & 2 - [[ConferenceCall_2011_10_20|OntoIOp]] & ElisaKendall
- "Getting OOR Development Going" Take V & VI - on Eclipse & on BioPortal
- 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: Ken Baclawski & Todd Schneider - Discussant: Ray Fergerson - OOR/ConferenceCall_2011_11_29
- planning and coordination on upcoming OOR events
- 2011_12_13 - Tuesday: OOR Metadata Workshop-V - Chair: Michael Grüninger ... inviting HaroldSolbrig+SherriDeCoronado and Mike Bennett ... this was subsequently postponed, as one of the speakeers will be traveling on that date. A new date will be announced once this has been re-scheduled.
- 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: Michael Grüninger & John Bateman <-- this will be postponed, Fabian Neuhaus helping champion this session
- ... lining up more?
- Member activities updates ... below ...(we will skip this stock agenda item at today's call.)
- Getting us to a stage when we can run a OOR-production box ...(we will skip this stock agenda item at today's call.)
- action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding) ...(we will skip this stock agenda item at today's call.)
- action planning for "soliciting" content (getting people to upload ontologies) ...(we will skip this stock agenda item at today's call.)
... Notes below are from previous meeting(s), and will be updated as this meeting progresses.
- Discussion: the newly adopted dual-track OOR approach
- action planning
- we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
- [1] this will be a straight forward, and updated BioPortal code install, with customization only for: the logo, the IP / License statement, categories.
- [2] this will be the instance we use to continue the current work of further development in Architecture, API, metadata, CL support, etc.
- consensus: both instances would use the same database (so ontologies uploaded are accessible by both instances, and are obviously "in sync" ... saving us the need to "import" as we ad discussed at the last meeting)
- Peter: the next things to push is to have "gatekeeping" in place so we can stand up a "production" OOR
- we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
- action planning
- OOR-sandbox and OOR-devbox status update
- new OOR logo now on the OOR-Sandbox - see: http://sandbox.oor.net
- NCBO BioPortal v3.3 released on 2011.10.19 - ref. http://ontolog.cim3.net/forum/oor-forum/2011-10/msg00027.html
- Xen vm image of the latest NCBO Appliance almost ready (as of our 2011.10.31 communication with the NCBO team)
- <support@oor.net> mail forwarder created:
- people can just mail this address or enter into "Send Feedback" form on the OOR Sandbox
- which currently gets forwarded to: Tejas Parikh, Ken Baclawski, Mike Dean, Peter P. Yim and <oor-users@ontolog.cim3.net> (--PeterYim/2011.10.14)
- remember to tweak this too, after the new vm image is in place - ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR_SandBox_Customization#nid2X3C
- assessing a strengthened OOR-NCBO collaborative relationship
- OOR-sandbox and OOR-devbox status update
- http://oor-01.cim3.net/ - now: http://sandbox.oor.net/ --> to become our OOR-devbox (OOR development server)
- http://oor-02.cim3.net/ - to be designated: http://sandbox.oor.net/
- Status and action review: OOR-dev box - http://oor-03.cim3.net
- Status and action review: SOCoP presentation box - http://socop.oor.net (at BBN?)
- updating "categories"
- Peter: the ICOM people suggests adding the categories of "standards" and "collaboration" (the latter probably belongs under "Cultural"
- Mike: something like Dublin Core should go under "metadata" - we are adding this category, "process" too
- discussed - see updated "category" list at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W6B
- one can select multiple categories by doing a "ctrl-click" (or "cmd" for Mac users)
- Ken: the software stores "categories" in an OMV ontology, and support a hierarchy of nested categories
- Mike: there is a GUI interface for adding categories
- All: we probably want to leave it simple (one level) and support "addition of categories" on demand
- Todd: For some categories, e.g., science, subcategories will be needed. Since the provided listing is linear, subcategories could be listed as pairs or triples: Science, Science - Biology, Science-Physics, Science-Physics-Gravitation, etc.
- Leo: we might consider adopting some standard categorization, like what the Library of Congress has put out (maybe not the entire hierarchy, but only the very upper level(s)
- Category list (based on MikeDean's list): (updated 2011.08.05)
- Upper Ontologies
- Standards (for example, Measurement)
- Science (for example, Biomedical)
- Financial
- Government
- Cultural (for example, Social Networking, People)
- Geospatial
- Commercial
- Literature
- Technology
- Provenance
- Defense
- Metadata (for example, OMV, Dublin Core)
- Process (for example, PSL)
- Other
- Getting us to a stage when members can contribute code ... how, ETA?
- (discussion 2011.05.06):
- an adopted Architecture & API is definitely crucial, but that's not all
- All team members are encouraged to mull over how we can get to that state effectively
- in particular ... how do we make this a "successful" community-driven, open source project!?
- (discussion 2011.06.03) ...
- (discussion 2011.05.06):
- code development on an Eclipse IDE for all?
- Code repository - considering "git" or github?
- Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
- ...
Member activities updates:
- Review: members and OOR-related activities (2011.11.01)
- OOR-sandbox status
- code repository status
- NCBO
- NEU
- Raytheon-BBN
- Bremen
- UToronto
- Ryerson
- Mathet
- SOCoP_INTEROP
- DataONE
- NeOn (KMi and STL)
- ONKI
- KBSI
- MMI
- Use Cases
- Architecture
- API
- Gatekeeping
- production OOR instance
- SIO
- Funding
- ICOM / DERI
Action planning for "soliciting" content (getting people to upload ontologies)
5. Funding progress:
6. Any Other Business:
- Peter P. Yim invited everyone to come to the 2011_12_08 - Thursday: Ontology Summit 2012 (Pre-Launch) Community Input & Planning Session - co-chairs: Steve Ray & Peter P. Yim - ConferenceCall_2011_12_08
7. Action items:
8. Schedule Next Meeting & Adjourn:
- Next Meetings:
- 2011_12_13 - Tuesday: OOR workshop on "finalizing OOR-sandbox upgrade" - OOR/ConferenceCall_2011_12_13
- 2012_01_03 - Tuesday: Regular OOR Team meeting OOR/ConferenceCall_2012_01_03
- Call adjourned at: 9:51 am PST
--
notes taken by: Peter P. Yim / 2011.12.06-9:54am PST
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.
Resources
- homepage - OpenOntologyRepository - http://OpenOntologyRepository.org
- OOR Charter - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
- "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"
- Team mailling list:
- OOR-Team discussion: [ oor-forum ] message archives - http://ontolog.cim3.net/forum/oor-forum/
- OOR-Users discussion and support: [ oor-users ] message archives - http://ontolog.cim3.net/forum/oor-users/
- Developers mailling list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/
- proceedings of our previous meetings, panel discussions and workshops
- the Joint OOR-OntologySummit2008 Panel Discussions:
- 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: Leo Obrst & Frank Olken; Panelists: Bruce Bargmeyer, Mike Dean, Mark Musen, Farrukh Najmi & Peter P. Yim - ConferenceCall_2008_02_28
- 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: Leo Obrst & Fabian Neuhaus; Panelists: William Bug, Evan Wallace, JohnLMcCarthy, Ken Baclawski, Peter Benson & Rex Brooks - ConferenceCall_2008_03_27
- 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: Leo Obrst & Fabian Neuhaus; Panelists: Doug Lenat, Deke Smith, Marcia Zeng, Denise Bedford, Pat Hayes, Mala Mehrotra & Rob Raskin - ConferenceCall_2008_04_03
- 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: Barry Smith & Michael Grüninger; Panelists: Michael Grüninger, Peter Haase, Natasha Noy & Elisa Kendall - ConferenceCall_2008_04_10
- the OOR Development panel sessions:
- 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: Leo Obrst; Panelists: Mike Dean, Mark Musen, Li Ding, Bruce Bargmeyer & Bill Andersen - ConferenceCall_2008_08_22
- 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: Todd Schneider; Panelists: Mark Musen, Natasha Noy, Mike Dean, Paul Buitelaar / Andreas Harth, Mathieu Daquin, Ken Baclawski, Michael Grüninger - ConferenceCall_2009_02_19
- 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: Mark Musen - Panelists: Tania Tudorache, Tim Redmond, Natasha Noy - ConferenceCall_2009_07_16
- 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: Natasha Noy - Panelists: Carlos Rueda, Paul Alexander, John Graybeal, Mike Dean, StephenGranite, AlexGarcia, Ken Baclawski - ConferenceCall_2009_07_30
- 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: Mike Dean - Panelists: Jim Chatigny, Michael Grüninger, Ken Baclawski, Natasha Noy - OOR/ConferenceCall_2010_02_19
- 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: Ken Baclawski & Todd Schneider - Panelists: Todd Schneider, Matthew Hettinger, Ken Baclawski and Máximo Gurméndez - ConferenceCall_2010_04_01
- 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: John F. Sowa - Panelists: JohnBateman-TillMossakowski, Michael Grüninger, Cameron Ross, Adam Pease, Pat Hayes - ConferenceCall_2010_09_10
- 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: Todd Schneider & Michael Grüninger - Panelists: Todd Schneider, Mike Dean, Natasha Noy, Immanuel Normann, Ken Baclawski, Michael Grüninger - OOR/ConferenceCall_2010_09_17
-
- 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15
- 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: Ray Fergerson & Peter P. Yim - OOR/ConferenceCall_2011_09_13
- 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: Ken Baclawski & Todd Schneider - Discussant: Ray Fergerson - OOR/ConferenceCall_2011_11_29
-
- 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: Ken Baclawski & Michael Grüninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, Eric Chan - OOR/ConferenceCall_2010_11_19
- 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_04
- 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_11
- 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_03_25
- 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_04_22
- 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_05_20
- 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_06_17
- 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_09_20
- 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: Ken Baclawski & Todd Schneider - OOR/ConferenceCall_2011_10_11
-
- 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: Mike Dean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08
- 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: Mike Dean - OOR/ConferenceCall_2011_11_22
-
- 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: Michael Grüninger - OOR/ConferenceCall_2011_03_18
- 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: Michael Grüninger - OOR/ConferenceCall_2011_05_13
- 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: Michael Grüninger - OOR/ConferenceCall_2011_05_27
- 2011_10_18 - Friday: OOR Metadata Workshop-IV - Chair: Michael Grüninger - OOR/ConferenceCall_2011_10_18
- 2011_12_13 - Tuesday: OOR Metadata Workshop-V - Chair: Michael Grüninger - OOR/ConferenceCall_2011_12_13
- the OOR-IPR mini-series:
- 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
- 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
- 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
- the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
- 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
- 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: Elisa Kendall on "Ontology-Related Metadata Standards" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_11_03
- 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_12_15
- OntologySummit2008 homepage
- OntologySummit2008_Communique
- OntologySummit2008/FaceToFaceAgenda & Proceedings
- The OOR Project Presentation (delivered at the Ontology Summit 2008 face-to-face workshop)
- [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)
- Our key content pages:
- OpenOntologyRepository_Scope
- OpenOntologyRepository_Organization
- OpenOntologyRepository_Process
- OpenOntologyRepository_Policy
- OpenOntologyRepository_IPR
- OpenOntologyRepository_Requirement
- OpenOntologyRepository_UseCases
- OpenOntologyRepository_Architecture
- OpenOntologyRepository_Approach
- OpenOntologyRepository_Roadmap
- OpenOntologyRepository_Plan
- OpenOntologyRepository_Funding
- OpenOntologyRepository_ResearchIssues
- OpenOntologyRepository_ResearchActivity
- OpenOntologyRepository_Development
- OpenOntologyRepository_Metadata
- OOR/ActiveMemberContribution
- OOR Project site at SemWebCentral - http://oor.semwebcentral.org
- Public instances of OOR - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:
- OOR_SandBox - http://oor-03.cim3.net - http://sandbox.oor.net/
- OOR_DevBox - http://oor-01.cim3.net - http://dev.oor.net/
- NCBO - BioPortal
- BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support
- NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development