Ontolog Forum
| Session | Planning |
|---|---|
| Duration | 1 hour |
| Date/Time | 12 Oct 2022 16:00 GMT |
| 9:00am PDT/12:00pm EDT | |
| 5:00pm BST/6:00pm CEST | |
| Convener | Ken Baclawski |
Ontology Summit 2023 Planning
Helping scientific researchers make better use of ontologies
Agenda
- Gary Berg-Cross will present suggestions for the summit theme. Video Recording
- Informal "brainstorming" session Video Recording
Conference Call Information
- Date: Wednesday, 12 Oct 2022
- Start Time: 9:00am PDT / 12:00pm EDT / 6:00pm CEST / 5:00pm BST / 1600 UTC
- ref: World Clock
- Expected Call Duration: 1 hour
- Video Conference URL
- Conference ID: 837 8041 8377
- Passcode: 323309
- Chat Room
The unabbreviated URLs are:
- Conference URL: https://us02web.zoom.us/j/83780418377?pwd=MlRFTHJQclRBd3RhYVl3aG1rTHJOQT09
- Chat room: http://webconf.soaphub.org/conf/room/ontology_summit_2023
Attendees
Discusssion
[12:14] Gary BC: A theme for organizing the 2023 Ontology Summit... How to "help scientists make better use of ontologies" a goal set by James Overton who is will be be co-organizer with me.
- The Where, Who, and How details would be a good topic for the 2023 Ontology Summit.
- 40% of this could come from the BioMed domain and the OboFoundry and the another 40% from other domains and efforts with the remaining 20% devoted to bringing this together.
[12:15] Gary BC: Talks on Ontology Tools and Workflow management (FAIR ontology support)
- Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
- ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.
[12:16] Gary BC: Example of talk topics: James Overton overview
- COB the use of a high-level, core reference model (Chris Mungall)
- Ontology Development Kit (ODK): A toolkit for initializing a new ontology repository. The template includes a structured directory, a Makefile with automated release workflows, continuous integration testing, and full documentation.
- ROBOT: A command line tool to automate ontology workflows. It includes commands that can be used manually or integrated in automated processes to develop and release ontologies.
- Onto-Animals: Tools to extract external ontology terms, compare ontologies, edit ontology terms, query and visualize ontologies, and more.
- VOCOL: An integrated environment for collaborative vocabulary development
- Karma Data Integration: A data integration tool
- Ontofox: An ontology term and relation extraction and reuse tool
- Ubergraph: A sparql endpoint with many OBO ontologies loaded and pre-reasoned with simple triples materialized
- OBO Dashboard: An assesment of OBO Foundry ontologies conformance to OBO Foundry principles
- OBO Community Health Report: A self-updating assessment of the quality of metadata, responsiveness of the maintainers, and the overall community engagement for each OBO Foundry ontology.
[12:16] Gary BC: have to go. Let me know what else might be discussed about this.
[12:27] Ken Baclawski: We had a nice discussion. The planning process will continue next week at the same time and connection URL.
[12:28] Ken Baclawski: Meeting is adjourned.
[12:32] Gary BC: OK WE can follow up as needed. Maybe a discussion on the Forum???
Resources
Previous Meetings
Next Meetings
| Session | |
|---|---|
| ConferenceCall 2022 10 19 | Planning |
| ConferenceCall 2022 10 26 | Planning |
| ConferenceCall 2022 11 09 | Planning |
| ... further results | |