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(Last updated at: 2009-07-21 17:55:25 By user: PeterYim)
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'''[[OpenOntologyRepository]] team conference call, Fri 2009.07.10, 1.0~1.5 Hr. call starting 12:00pm EDT / 9:00am PDT / 6:00pm CET / 5:00pm GMT / 17:00 UTC'''  
 
'''[[OpenOntologyRepository]] team conference call, Fri 2009.07.10, 1.0~1.5 Hr. call starting 12:00pm EDT / 9:00am PDT / 6:00pm CET / 5:00pm GMT / 17:00 UTC'''  
  
=== [[MeetingsCalls|Conference Call]] Details: ===
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=== [[MeetingsCalls|Conference Call]] Details  ===
  
 
* Date: '''Friday, July 10, 2009 '''  
 
* Date: '''Friday, July 10, 2009 '''  
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* Attended:  
 
* Attended:  
** [[MikeDean]] (chair)  
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** MikeDean (chair)  
** [[KenBaclawski]]
+
** KenBaclawski  
** [[PeterYim]]
+
** PeterYim  
** [[MichaelGruninger]]
+
** MichaelGruninger  
** [[DarrenOng]]
+
** DarrenOng  
** [[BartGajderowicz]]
+
** BartGajderowicz  
** [[RaviSharma]]
+
** RaviSharma  
** [[ToddSchneider]]
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** ToddSchneider  
  
 
* Expecting:  
 
* Expecting:  
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* Regrets:  
 
* Regrets:  
** [[LeoObrst]]
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** LeoObrst  
  
== Agenda Ideas: ==
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== Agenda Ideas  ==
  
 
''please insert below (along with your name for follow-up purposes)''  
 
''please insert below (along with your name for follow-up purposes)''  
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1. Meeting called to order:  
 
1. Meeting called to order:  
  
* [[MikeDean]] takes the chair and welcomed everyone  
+
* MikeDean takes the chair and welcomed everyone  
* [[PeterYim]] volunteers to take minutes of the meeting  
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* PeterYim volunteers to take minutes of the meeting  
  
 
* review and adopt agenda  
 
* review and adopt agenda  
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* reports on member activities that are OOR-related  
 
* reports on member activities that are OOR-related  
  
* '''Overview on UML diagrams of [[BioPortal]] systems'''  
+
* '''Overview on UML diagrams of BioPortal systems'''  
 
** see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_Architecture#nid1XRD  
 
** see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_Architecture#nid1XRD  
 
** Todd: UML diagrams generated by "Enterprise Architect" ... will be posting the full set ...  
 
** Todd: UML diagrams generated by "Enterprise Architect" ... will be posting the full set ...  
** Misha: the diagrams are complete; slightly difficult to read now -- some parts not 'relevant' to [[BioPortal]] could be removed to make it more readable; with the new update, a lot of changes coming in anyway as an ontology is being used  
+
** Misha: the diagrams are complete; slightly difficult to read now -- some parts not 'relevant' to BioPortal could be removed to make it more readable; with the new update, a lot of changes coming in anyway as an ontology is being used  
 
*** Misha will help provide a list of the 'relevant' subset of classes  
 
*** Misha will help provide a list of the 'relevant' subset of classes  
 
** Benjamin: MDA?  
 
** Benjamin: MDA?  
 
*** ... Todd: probably stick with UML now, and eventually move to CL?  
 
*** ... Todd: probably stick with UML now, and eventually move to CL?  
 
** Peter / Todd: will add revision level onto the diagrams in the future ... the ones from before, we'll add a date for identification purposes  
 
** Peter / Todd: will add revision level onto the diagrams in the future ... the ones from before, we'll add a date for identification purposes  
** Peter: [[MishaDorf]] suggested a full UML diagram and a highlight diagram ... guess Todd is working on them (haven't heard from him yet)  
+
** Peter: MishaDorf suggested a full UML diagram and a highlight diagram ... guess Todd is working on them (haven't heard from him yet)  
** Todd/2009.07.10 - full set of UML diagrams (on [[BioPortal]] 2.0) uploaded to the server (as of 2009.06.14)  
+
** Todd/2009.07.10 - full set of UML diagrams (on BioPortal 2.0) uploaded to the server (as of 2009.06.14)  
 
*** see: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_3Mar2009_UML-Model_ToddSchneider_20090614/index.html  
 
*** see: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_3Mar2009_UML-Model_ToddSchneider_20090614/index.html  
 
** ALL: vote of thanks to Todd  
 
** ALL: vote of thanks to Todd  
** Todd: (ref. Misha's suggestion of doinga "highlighted" version with some of the packages removed) think it is better use of time to do another set of diagrams oo the recently updated version of [[BioPortal]] (v2.1d) instead  
+
** Todd: (ref. Misha's suggestion of doinga "highlighted" version with some of the packages removed) think it is better use of time to do another set of diagrams oo the recently updated version of BioPortal (v2.1d) instead  
 
*** Peter: suggest that Todd might ping Misha via the [oor-dev] list to get his advice on when best to grab the new codes for reverse engineering  
 
*** Peter: suggest that Todd might ping Misha via the [oor-dev] list to get his advice on when best to grab the new codes for reverse engineering  
 
*** Misha already responded - see: http://ontolog.cim3.net/forum/oor-dev/2009-07/msg00001.html  
 
*** Misha already responded - see: http://ontolog.cim3.net/forum/oor-dev/2009-07/msg00001.html  
*** Todd: just downloaded the new [[BioPortal]] v2.1d released codes (1016) - will have the UML diagrams by the next call  
+
*** Todd: just downloaded the new BioPortal v2.1d released codes (1016) - will have the UML diagrams by the next call  
  
 
*   
 
*   
 
** K: we might want to do some acknowledgment on trademarks like "UML" (which is a registered trademark of OMG)  
 
** K: we might want to do some acknowledgment on trademarks like "UML" (which is a registered trademark of OMG)  
*** Peter to add line on [[CreditsAcknowledgement]] page  
+
*** Peter to add line on CreditsAcknowledgement page  
 
**** done! - see:  http://ontolog.cim3.net/cgi-bin/wiki.pl?CreditsAcknowledgement#nid1YWO (--ppy/200907.10-11:36)  
 
**** done! - see:  http://ontolog.cim3.net/cgi-bin/wiki.pl?CreditsAcknowledgement#nid1YWO (--ppy/200907.10-11:36)  
  
* Potential for collaboration with the geospatial ontology folks''' - [[NancyWiegand]] / [[GaryBergCross]]  
+
* Potential for collaboration with the geospatial ontology folks''' - NancyWiegand / [[GaryBergCross]]  
** Nancy: intro; [[SOCoP]] - submitting a grant proposal to NSF again; possibility of using OOR for their work  
+
** Nancy: intro; SOCoP - submitting a grant proposal to NSF again; possibility of using OOR for their work  
** Gary: intro - [[SOCoP]] secretary; use of ontology repository for interoperability, social aspect of sharing;  
+
** Gary: intro - SOCoP secretary; use of ontology repository for interoperability, social aspect of sharing;  
 
** Mike: welcome the collaboration; probably some additional features needed to support geospatial ontologies  
 
** Mike: welcome the collaboration; probably some additional features needed to support geospatial ontologies  
 
*** Nancy: how much development is expected?  
 
*** Nancy: how much development is expected?  
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** Ken/2009.07.10 update - I am working with Nancy to supply her some of the language for her proposal  
 
** Ken/2009.07.10 update - I am working with Nancy to supply her some of the language for her proposal  
 
** Peter: Ontolog has provided Nancy and Gary a "Letter of Collaboration" to NSF - see: [http://ontolog.cim3.net/file/work/Ontolog_doc/SOCoP_NSF07565-Letter-of-Collaboration--Ontolog_20090703.pdf the Letter]  
 
** Peter: Ontolog has provided Nancy and Gary a "Letter of Collaboration" to NSF - see: [http://ontolog.cim3.net/file/work/Ontolog_doc/SOCoP_NSF07565-Letter-of-Collaboration--Ontolog_20090703.pdf the Letter]  
** Mike/2009.07.10 - will do "Support Letter" to NSF (for this proposal) on behalf of OOR too (--done! [[MikeDean]]/2009.07.20) - see: [http://ontolog.cim3.net/file/work/OOR/OOR_doc/SOCoP_NSF07565-Support--OOR_20090720.pdf the Letter]  
+
** Mike/2009.07.10 - will do "Support Letter" to NSF (for this proposal) on behalf of OOR too (--done! MikeDean/2009.07.20) - see: [http://ontolog.cim3.net/file/work/OOR/OOR_doc/SOCoP_NSF07565-Support--OOR_20090720.pdf the Letter]  
 
** Ken: coming from the experience as a review panelist, these letters can help (as well as hurt) a proposal  
 
** Ken: coming from the experience as a review panelist, these letters can help (as well as hurt) a proposal  
  
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* Joint OOR-Ontolog Panel sessions ... on deck:  
 
* Joint OOR-Ontolog Panel sessions ... on deck:  
** panel session on Protege / webProtege / [[BioPortal]] / [[CODS]] / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: [[MarkMusen]] - date confirmed Thu 16-July-2009  
+
** panel session on Protege / webProtege / BioPortal / [[CODS]] / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: MarkMusen - date confirmed Thu 16-July-2009  
 
*** panelists will mainly be from Stanford / NCBO  
 
*** panelists will mainly be from Stanford / NCBO  
** panel session on "[[BioPortal]]-based ontology repository implementation and development" - chair: [[NatashaNoy]] - date confirmed Thu 30-July-2009  
+
** panel session on "BioPortal-based ontology repository implementation and development" - chair: NatashaNoy - date confirmed Thu 30-July-2009  
*** candidate panelists: NCBO folks, MMI folks, OOR- [[MikeDean]], [[MichaelGruninger]], [[KenBaclawski]], [[AlexGarcia]], [[KatherineGoodier]] (cultural codebase) ...  [[StephenGranite]]?, [[BartGajderowicz]]?, [[GaryBergCross]]?  
+
*** candidate panelists: NCBO folks, MMI folks, OOR- MikeDean, MichaelGruninger, KenBaclawski, AlexGarcia, KatherineGoodier (cultural codebase) ...  StephenGranite?, BartGajderowicz?, [[GaryBergCross]]?  
** panel session on "OOR Research Issues" - champion: [[KenBaclawski]] - the date needs to be rescheduled  
+
** panel session on "OOR Research Issues" - champion: KenBaclawski - the date needs to be rescheduled  
*** candidate panelists: Michael, Leo->[[SuzetteStowtenburg]], [[NatashaNoy]], [[ElisaKendall]], [[ChrisWelty]], OOR team members from the EU, (and possibly other who were engaged when the OOR initiative first started ([[OpenOntologyRepository|ref.]]).  
+
*** candidate panelists: Michael, Leo->SuzetteStowtenburg, NatashaNoy, ElisaKendall, ChrisWelty, OOR team members from the EU, (and possibly other who were engaged when the OOR initiative first started ([[OpenOntologyRepository|ref.]]).  
 
*** Ken will send out a doodle scheduler on this soon!  
 
*** Ken will send out a doodle scheduler on this soon!  
** Ken/2009.07.10 update - session now scheduled for Thu 2009.08.06 - see: [[ConferenceCall_2009_08_06]]
+
** Ken/2009.07.10 update - session now scheduled for Thu 2009.08.06 - see: ConferenceCall_2009_08_06  
*** Panelists: [[MathieuDaquin]], [[KenBaclawski]], [[AlexGarcia]], [[MichaelGruninger]], [[ElisaKendall]], [[CarlosRueda]], [[ToddSchneider]]
+
*** Panelists: MathieuDaquin, KenBaclawski, AlexGarcia, MichaelGruninger, ElisaKendall, CarlosRueda, ToddSchneider  
 
*** will get people to contribute (between now and then) and collect thought on the page at: [[OOR/ResearchIssues]]  
 
*** will get people to contribute (between now and then) and collect thought on the page at: [[OOR/ResearchIssues]]  
 
*   
 
*   
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* '''OOR sandbox instance - status review''' - http://oor-01.cim3.net  
 
* '''OOR sandbox instance - status review''' - http://oor-01.cim3.net  
** Benjamin: major update - [[BioPortal]] v2.1d - to be released on 12-Jun-2009  
+
** Benjamin: major update - BioPortal v2.1d - to be released on 12-Jun-2009  
 
*** Natasha/2009.06.12 - slightly delayed, release date could now be a couple of week out  
 
*** Natasha/2009.06.12 - slightly delayed, release date could now be a couple of week out  
 
** Peter: hardware for OOR sandbox-2 (and later the production instance of OOR) will be ready fairly soon (next few days).  
 
** Peter: hardware for OOR sandbox-2 (and later the production instance of OOR) will be ready fairly soon (next few days).  
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* '''OOR development''' activities  
 
* '''OOR development''' activities  
** Michael: running into issues with trying to add FOL/CL upload/download onto the [[BioPortal]] codebase  
+
** Michael: running into issues with trying to add FOL/CL upload/download onto the BioPortal codebase  
 
*** Michael: issues with inherent binary relationship limitation with the existing OWL implementation (based on Protege)  
 
*** Michael: issues with inherent binary relationship limitation with the existing OWL implementation (based on Protege)  
*** Natasha: [[BioPortal]] now supports two backends now - the Protege backend and the [[LexGrid]] (OBO/Mayo) backend  
+
*** Natasha: BioPortal now supports two backends now - the Protege backend and the LexGrid (OBO/Mayo) backend  
*** [[PatCassidy]]: translate? ... having a CL backend for Protege would be useful  
+
*** PatCassidy: translate? ... having a CL backend for Protege would be useful  
 
** Peter: please continue this conversation on the [oor-dev] list  
 
** Peter: please continue this conversation on the [oor-dev] list  
 
** K: possibly add another use case for CL  
 
** K: possibly add another use case for CL  
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* '''Funding and proposals'''  
 
* '''Funding and proposals'''  
 
** Peter: suggest picking up the effort ... NSF solicitation like [http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=502112&org=OCI&sel_org=OCI&from=fund INTEROP (07-565)] (due 2009.07.23), [http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=500066&org=OCI&sel_org=OCI&from=fund STCI (PD 06-7231)] (due 2009.08.13)  
 
** Peter: suggest picking up the effort ... NSF solicitation like [http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=502112&org=OCI&sel_org=OCI&from=fund INTEROP (07-565)] (due 2009.07.23), [http://www.nsf.gov/funding/pgm_summ.jsp?pims_id=500066&org=OCI&sel_org=OCI&from=fund STCI (PD 06-7231)] (due 2009.08.13)  
*** Peter: (in the spirit of the encouraged pairwise collaboration) I'll be making proposals to the INTEROP and STCI programs with [[MarkMusen]]
+
*** Peter: (in the spirit of the encouraged pairwise collaboration) I'll be making proposals to the INTEROP and STCI programs with MarkMusen  
 
*** Ken: I'll look into either INTEROP or STCI to see if we can do something  
 
*** Ken: I'll look into either INTEROP or STCI to see if we can do something  
 
** Ken will be in the DC Area Jul-13 for an NIH panel. Ken and K could meet up and do some coordination during that visit  
 
** Ken will be in the DC Area Jul-13 for an NIH panel. Ken and K could meet up and do some coordination during that visit  
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* Next Meeting:  
 
* Next Meeting:  
** next meeting will be our joint OOR-Ontolog panel session on Thu 2009.07.16 10:30am PDT / 1:30pm EDT - see developing details on: [[ConferenceCall_2009_07_16]]
+
** next meeting will be our joint OOR-Ontolog panel session on Thu 2009.07.16 10:30am PDT / 1:30pm EDT - see developing details on: ConferenceCall_2009_07_16  
 
** next regular team call Fri 2009.07.24 12:00pm ET / 9:00am PT / 16:00 GMT/UTC - see (closer to the time) session page at: [[OOR/ConferenceCall_2009_07_24]]  
 
** next regular team call Fri 2009.07.24 12:00pm ET / 9:00am PT / 16:00 GMT/UTC - see (closer to the time) session page at: [[OOR/ConferenceCall_2009_07_24]]  
 
** ''Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr starting 12:00pm ET / 9:00am PT / 16:00 GMT/UTC ''  
 
** ''Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr starting 12:00pm ET / 9:00am PT / 16:00 GMT/UTC ''  
  
 
* Call adjourned at: 9:59am PDT  
 
* Call adjourned at: 9:59am PDT  
 
  
 
--
 
--
notes taken by: [[PeterYim]] / 2009.07.10-10:15am PDT
 
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.
 
  
 +
notes taken by: PeterYim / 2009.07.10-10:15am PDT
 +
 +
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.
  
 
----
 
----
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* Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' discussion archives - http://ontolog.cim3.net/forum/oor-dev/  
 
* Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' discussion archives - http://ontolog.cim3.net/forum/oor-dev/  
 
* the four '''joint [[OOR]]-OntologySummit2008 Panel Discussions''':  
 
* the four '''joint [[OOR]]-OntologySummit2008 Panel Discussions''':  
** 2008_02_28 - Thursday: Joint OOR-[[OntologySummit2008]] Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: [[LeoObrst]] & [[FrankOlken]]; Panelists: [[BruceBargmeyer]], [[MikeDean]], [[MarkMusen]], [[FarrukhNajmi]] & [[PeterYim]] - [[ConferenceCall_2008_02_28]]     
+
** 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28     
** 2008_03_27 - Thursday: Joint OOR-[[OntologySummit2008]] Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: [[LeoObrst]] & [[FabianNeuhaus]]; Panelists: [[WilliamBug]], [[EvanWallace]], [[JohnLMcCarthy]], [[KenBaclawski]], [[PeterBenson]] & [[RexBrooks]] - [[ConferenceCall_2008_03_27]]     
+
** 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, [[JohnLMcCarthy]], KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27     
** 2008_04_03 - Thursday: Joint OOR-[[OntologySummit2008]] Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: [[LeoObrst]] & [[FabianNeuhaus]]; Panelists: [[DougLenat]], [[DekeSmith]], [[MarciaZeng]], [[DeniseBedford]], [[PatHayes]], [[MalaMehrotra]] & [[RobRaskin]] - [[ConferenceCall_2008_04_03]]     
+
** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03     
** 2008_04_10 - Thursday: Joint OOR-[[OntologySummit2008]] Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith]] & [[MichaelGruninger]]; Panelists: [[MichaelGruninger]], [[PeterHaase]], [[NatashaNoy]] &  [[ElisaKendall]] - [[ConferenceCall_2008_04_10]]     
+
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy &  ElisaKendall - ConferenceCall_2008_04_10     
 
* the '''OOR-dev: Synergies & Gaps panel session''':  
 
* the '''OOR-dev: Synergies & Gaps panel session''':  
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst]]; Panelists: [[MikeDean]], [[MarkMusen]][[LiDing]], [[BruceBargmeyer]] & [[BillAndersen]] - [[ConferenceCall_2008_08_22]]     
+
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen,  LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22     
* '''[[OntologySummit2008]]''' homepage  
+
* '''OntologySummit2008''' homepage  
 
** '''[[OntologySummit2008_Communique]]'''  
 
** '''[[OntologySummit2008_Communique]]'''  
** '''[[OntologySummit2008]]/[[FaceToFaceAgenda]]'''  
+
** '''[[OntologySummit2008/FaceToFaceAgenda]]'''  
** The '''[http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt OOR Project] Presentation''' (delivered at the [[OntologySummit2008]] face-to-face workshop)  
+
** The '''[http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt OOR Project] Presentation''' (delivered at the OntologySummit2008 face-to-face workshop)  
 
* '''[ [http://ontolog.cim3.net/forum/ontology-summit/ ontology-summit] ]''' discussion archives - http://ontolog.cim3.net/forum/ontology-summit/  
 
* '''[ [http://ontolog.cim3.net/forum/ontology-summit/ ontology-summit] ]''' discussion archives - http://ontolog.cim3.net/forum/ontology-summit/  
 
* Our key content pages:  
 
* Our key content pages:  
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* '''OOR Project site at [[SemWebCentral]]''' - http://oor.projects.semwebcentral.org  
 
* '''OOR Project site at [[SemWebCentral]]''' - http://oor.projects.semwebcentral.org  
 
* our first '''sandbox instance of OOR''' - http://oor-01.cim3.net/  
 
* our first '''sandbox instance of OOR''' - http://oor-01.cim3.net/  
** NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development
+
** NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
 +
 
 +
[[Category:Event_Meeting]]    [[Category:OOR]]
 +
 
 +
 
 +
 
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This page has been migrated from the [http://ontolog.cim3.net/wiki  OntologWiki] - Click [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2009_07_10 here] for original page

Revision as of 00:54, 14 December 2015

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Contents

OpenOntologyRepository: OOR Team Conference Call - Fri 2009-07-10     (1)

OpenOntologyRepository team conference call, Fri 2009.07.10, 1.0~1.5 Hr. call starting 12:00pm EDT / 9:00am PDT / 6:00pm CET / 5:00pm GMT / 17:00 UTC     (1A)

  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)     (1B5)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.     (1B7)

Attendees     (1D)

  • Expecting:     (1D2)
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...     (1D2A)

Agenda Ideas     (1E)

please insert below (along with your name for follow-up purposes)     (1E1)

Agenda & Proceedings     (1F)

1. Meeting called to order:     (1F1)

2. Roll Call:     (1F5)

3. Status Review and Discussion:     (1F7)

Suggested topics to be covered:     (1F10)

  • Potential for collaboration with the geospatial ontology folks - NancyWiegand / GaryBergCross     (1F15)
    • Nancy: intro; SOCoP - submitting a grant proposal to NSF again; possibility of using OOR for their work     (1F15A)
    • Gary: intro - SOCoP secretary; use of ontology repository for interoperability, social aspect of sharing;     (1F15B)
    • Mike: welcome the collaboration; probably some additional features needed to support geospatial ontologies     (1F15C)
    • K: how much data will be involved .. using data.gov?     (1F15D)
      • Gary: possibly using some USGS data (K: which is already linked to data.gov)     (1F15D1)
    • Nancy: supporting data store ... or just ontologies     (1F15E)
    • Todd: OOR not supposed to provide data store ... but can consider a extension project to work on     (1F15F)
    • Nancy: is the infrastructure stable ... and expected to be around for many years?     (1F15G)
    • Gary: Nancy is the PI; proposal due in July;     (1F15H)
    • K: National Geospatial Symposium ...     (1F15I)
    • Ken: already has a grant ... can share some of the language used ... Nancy will contact Ken     (1F15J)
    • Ken/2009.07.10 update - I am working with Nancy to supply her some of the language for her proposal     (1F15K)
    • Peter: Ontolog has provided Nancy and Gary a "Letter of Collaboration" to NSF - see: the Letter     (1F15L)
    • Mike/2009.07.10 - will do "Support Letter" to NSF (for this proposal) on behalf of OOR too (--done! MikeDean/2009.07.20) - see: the Letter     (1F15M)
    • Ken: coming from the experience as a review panelist, these letters can help (as well as hurt) a proposal     (1F15N)
  • Joint OOR-Ontolog Panel sessions ... on deck:     (1F17)
    • panel session on Protege / webProtege / BioPortal / CODS / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: MarkMusen - date confirmed Thu 16-July-2009     (1F17A)
    • panel session on "BioPortal-based ontology repository implementation and development" - chair: NatashaNoy - date confirmed Thu 30-July-2009     (1F17B)
      • candidate panelists: NCBO folks, MMI folks, OOR- MikeDean, MichaelGruninger, KenBaclawski, AlexGarcia, KatherineGoodier (cultural codebase) ... StephenGranite?, BartGajderowicz?, GaryBergCross?     (1F17B1)
    • panel session on "OOR Research Issues" - champion: KenBaclawski - the date needs to be rescheduled     (1F17C)
      • candidate panelists: Michael, Leo->SuzetteStowtenburg, NatashaNoy, ElisaKendall, ChrisWelty, OOR team members from the EU, (and possibly other who were engaged when the OOR initiative first started (ref.).     (1F17C1)
      • Ken will send out a doodle scheduler on this soon!     (1F17C2)
    • Ken/2009.07.10 update - session now scheduled for Thu 2009.08.06 - see: ConferenceCall_2009_08_06     (1F17D)
      • Panelists: MathieuDaquin, KenBaclawski, AlexGarcia, MichaelGruninger, ElisaKendall, CarlosRueda, ToddSchneider     (1F17D1)
      • will get people to contribute (between now and then) and collect thought on the page at: OOR/ResearchIssues     (1F17D2)
    • Peter: noting the huge overlap of panelists (and possibly topics) between the 7/30 & 8/06 sessions ... suggest we try to leverage that to our advantage     (1F18A)
      • Ken: I will be looking more for discussions, rather than presentation     (1F18A1)
        • also, looking for longer term issue rather than more immediate issues     (1F18A1A)
      • Ken, Natasha, Mike and Peter will try to coordinate offline in the organizational effort     (1F18A2)
  • OOR sandbox instance - status review - http://oor-01.cim3.net     (1F21)
    • Benjamin: major update - BioPortal v2.1d - to be released on 12-Jun-2009     (1F21A)
      • Natasha/2009.06.12 - slightly delayed, release date could now be a couple of week out     (1F21A1)
    • Peter: hardware for OOR sandbox-2 (and later the production instance of OOR) will be ready fairly soon (next few days).     (1F21B)
      • an updated version of the CODS server will also be installed on that hardware cluster     (1F21B1)
    • Peter/2009.07.10 - hardware is now ready ... once the Stanford / NCBO are back from their International Conference (this week) in Amsterdam     (1F21C)
  • ISWC 2009     (1F23)
    • candidates: A poster on OOR; also presentation as a "Lightning Talk"; BOF meeting     (1F23A)
    • Todd, K & Ken will champion and coordinate this group of efforts     (1F23B)
      • Ken/2009.7.10: work the poster is in progress     (1F23B1)
      • Mike: would be great if we could also do a demo ... Ken: we'll submit that (a demo) as part of the proposal.     (1F23B2)
      • Ken / Mike / Michael: we'll do something to demo Common Logic support too     (1F23B3)
  • K: I am involved in some of the Obama cyberinfrastructure/security initiatives, and am promoting the use of an OOR     (1F24)
    • Todd: you might consider participating in the NCOIC community too, K.     (1F24A)
  • OOR development activities     (1F25)
    • Michael: running into issues with trying to add FOL/CL upload/download onto the BioPortal codebase     (1F25A)
      • Michael: issues with inherent binary relationship limitation with the existing OWL implementation (based on Protege)     (1F25A1)
      • Natasha: BioPortal now supports two backends now - the Protege backend and the LexGrid (OBO/Mayo) backend     (1F25A2)
      • PatCassidy: translate? ... having a CL backend for Protege would be useful     (1F25A3)
    • Peter: please continue this conversation on the [oor-dev] list     (1F25B)
    • K: possibly add another use case for CL     (1F25C)
    • Peter/2009.07.10: would love to see Mike's team (or Mike to take the lead on a broader effort) would do a native FOL backend for the OOR     (1F25D)
    • Ken/2009.07.10: we need internal interfaces ... modularization ... [Ken, please elaborate ...]     (1F25E)
    • Todd/2009.07.10: need to re-emphasize that we should keep a focus on storing and retrieving "stuff" (so far, the focus has been too much on "ontologies") ... need separation of concerns     (1F25F)
    • Michael/2009.07.10 - we'll get some questions about working on a CL backend onto the [oor-dev] list, and look forward to the Jul-16 & Jul-30 sessions to get some clarification.     (1F25G)
  • Funding and proposals     (1F29)
    • Peter: suggest picking up the effort ... NSF solicitation like INTEROP (07-565) (due 2009.07.23), STCI (PD 06-7231) (due 2009.08.13)     (1F29A)
      • Peter: (in the spirit of the encouraged pairwise collaboration) I'll be making proposals to the INTEROP and STCI programs with MarkMusen     (1F29A1)
      • Ken: I'll look into either INTEROP or STCI to see if we can do something     (1F29A2)
    • Ken will be in the DC Area Jul-13 for an NIH panel. Ken and K could meet up and do some coordination during that visit     (1F29B)
    • Bart: what kind of help can we get (for proposals in Canada)     (1F29C)

4. New Issues:     (1F31)

5. Any Other Business:     (1F32)

6. Action items:     (1F33)

7. Schedule Next Meeting & Adjourn:     (1F35)

  • Next Meeting:     (1F36)
    • next meeting will be our joint OOR-Ontolog panel session on Thu 2009.07.16 10:30am PDT / 1:30pm EDT - see developing details on: ConferenceCall_2009_07_16     (1F36A)
    • next regular team call Fri 2009.07.24 12:00pm ET / 9:00am PT / 16:00 GMT/UTC - see (closer to the time) session page at: OOR/ConferenceCall_2009_07_24     (1F36B)
    • Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr starting 12:00pm ET / 9:00am PT / 16:00 GMT/UTC     (1F36C)

notes taken by: PeterYim / 2009.07.10-10:15am PDT     (1F39)

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.     (1F40)


Resources     (1G)


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