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OpenOntologyRepository: "OOR for Big Data" Workshop-I - Tue 2012_08_14     (1)

Topic: "OOR for Big Data" - Brainstorm Session     (1A)

Session Chair: MikeDean (OOR; Raytheon-BBN)     (1B)

  • Shared-screen support (VNC session), if applicable, will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/     (1C7E)
    • view-only password: "ontolog"     (1C7E1)
    • if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.     (1C7E2)
    • people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the slides (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.     (1C7E3)
    • instructions: once you got access to the page, click on the "settings" button, and identify yourself (by modifying the Name field from "anonymous" to your real name, like "JaneDoe").     (1C7F1)
    • You can indicate that you want to ask a question verbally by clicking on the "hand" button, and wait for the moderator to call on you; or, type and send your question into the chat window at the bottom of the screen.     (1C7F2)
    • thanks to the soaphub.org folks, one can now use a jabber/xmpp client (e.g. gtalk) to join this chatroom. Just add the room as a buddy - (in our case here) oor_20120814@soaphub.org ... Handy for mobile devices!     (1C7F3)
  • Discussions and Q & A:     (1C7G)
    • Nominally, when a presentation is in progress, the moderator will mute everyone, except for the speaker.     (1C7G1)
    • To un-mute, press "*7" ... To mute, press "*6" (please mute your phone, especially if you are in a noisy surrounding, or if you are introducing noise, echoes, etc. into the conference line.)     (1C7G2)
    • we will usually save all questions and discussions till after all presentations are through. You are encouraged to jot down questions onto the chat-area in the mean time (that way, they get documented; and you might even get some answers in the interim, through the chat.)     (1C7G3)
    • During the Q&A / discussion segment (when everyone is muted), If you want to speak or have questions or remarks to make, please raise your hand (virtually) by clicking on the "hand button" (lower right) on the chat session page. You may speak when acknowledged by the session moderator (again, press "*7" on your phone to un-mute). Test your voice and introduce yourself first before proceeding with your remarks, please. (Please remember to click on the "hand button" again (to lower your hand) and press "*6" on your phone to mute yourself after you are done speaking.)     (1C7G4)
  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)     (1C7H)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.     (1C7J)

Attendees     (1D)

  • Expecting:     (1D2)
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...     (1D3A)

Agenda Ideas     (1D5)

please insert any additional items below (along with your name for follow-up purposes)     (1D5A)

Abstract     (1E)

Topic: "OOR for Big Data" - Brainstorm Session     (1E1)

This is a following up session from the presentation our team made on the case of "Leveraging OOR in Big Open Data" at the virtual panel session on ConferenceCall_2012_05_17.     (1E2)

We will use this workshop to strategize and brainstorm on how we should approach this very important initiative going forward.     (1E3)

The plan for this session is to use the time of this session as fairly open discussion about use of OOR for Big Data. There will not be formal presentations (we are still a bit early for that). The chair will try to seed some discussion topics.     (1E4)

Agenda     (1F)

Topic: "OOR for Big Data" - Brainstorm Session     (1F1)

  • Session Format: this is a virtual session conducted over an augmented conference call     (1F2)

Proceedings     (1G)

Please refer to the above     (1G1)

IM Chat Transcript captured during the session    (1G2)

see raw transcript here.     (1G2A)

(for better clarity, the version below is a re-organized and lightly edited chat-transcript.)     (1G2B)

Participants are welcome to make light edits to their own contributions as they see fit.     (1G2C)

-- begin in-session chat-transcript --     (1G2D)

[08:22] Peter P. Yim: Welcome to the     (1G2E)

"OOR for Big Data" Workshop-I - Tue 2012_08_14     (1G2F)

Topic: "OOR for Big Data" Brainstorm Session     (1G2G)

Session Chair: Mike Dean (OOR; Raytheon-BBN)     (1G2H)

Mute control: *7 to un-mute ... *6 to mute     (1G2J)

Can't find Skype Dial pad?     (1G2K)

  • for Windows Skype users: Can't find Skype Dial pad? ... it's under the "Call" dropdown menu as "Show Dial pad"     (1G2L)
  • for Linux Skype users: please stay with (or downgrade to) Skype version 2.x for now     (1G2M)

(as a Dial pad seems to be missing on Linux-based Skype v4.x for skype-calls.)     (1G2N)

Proceedings:     (1G2O)

[08:37] Peter P. Yim: == Mike Dean starting the session off with his intro slides ...     (1G2P)

[08:41] Todd Schneider: [ref. Mike's slides #4 & 5] How do these supporting technologies fit into     (1G2Q)

overall IT/data architectures?     (1G2R)

[08:47] Peter P. Yim: == Q&A and Open Discussion ...     (1G2S)

[08:48] anonymous morphed into Elizabeth Florescu     (1G2T)

[08:49] Terry Longstreth: Mike mentioned RDF from SQL productions; Terry asked if that included     (1G2U)

capturing the logic from constraints, triggers (Mike added views).     (1G2V)

[08:51] Mike Bennett: How do you manage the relationship between the logical data model which     (1G2W)

corresponds to the (e.g. SQL) data source, and the ontology of the domain. How do we distinguish an     (1G2X)

ontology which is an RDF model of a data model design, versus an ontology of the real things?     (1G2Y)

[08:53] Mike Bennett: That is, how to formalize the model theoretic relationship between the elements     (1G2Z)

in the RDF model, and the things which they represent (data elements v things).     (1G2AA)

[08:54] Peter P. Yim: our opportunity (and challenge, of course) could be in: taking where the Linked     (1G2AB)

Data people leave off (say, having extracted a vocabulary on the dataset) and come up with the     (1G2AC)

ontology and the value added services that OOR is poised to provide ... of course, we should look at     (1G2AD)

starting from the dataset as well (not just from the vocabulary)     (1G2AE)

[08:58] Mike Bennett: Suggestion: in extracting information from large datasets, is there a role for     (1G2AF)

an "Ontology of the data" and a clear way of distinguishing this from the ontology of the subject     (1G2AG)

matter itself?     (1G2AH)

[09:01] Michael Grüninger: @MikeBennett: Do you see a role for an "ontology of the data"? What kinds     (1G2AI)

of concepts and relations do you see in such an ontology? Would it be domain-independent?     (1G2AJ)

[09:04] Mike Bennett: This is what I'm wondering. It's all too easy for someone to take a logical     (1G2AK)

model (which has been designed, rightly), converting it into RDF/OWL and saying "Lo, an ontology". I     (1G2AL)

think there must be a role for it in data extraction, but also a clear difference to ontologies of     (1G2AM)

the subject matter. With perhaps an RDF/OWL mapping ontology between the two?     (1G2AN)

[09:06] Mike Bennett: @Michael PS I suspect that the basic concepts such a model would be built from,     (1G2AO)

i.e. the top level classes, might be the constructs that exist in the data modeling language, e.g.     (1G2AP)

data table, join table, UML class, UML attribute and so on? I don't know, I'm still ruminating on     (1G2AQ)

[09:03] Peter P. Yim: candidate data that we might get our hands on and communities we can collaborate     (1G2AS)

with are probably in the domains of: (i) government data; (ii) geospatial / geo-science; (iii)     (1G2AT)

biomedical (iv) standards     (1G2AU)

[09:05] Peter P. Yim: a mini-series is coming up shortly - see:     (1G2AV)

is coming up next week (Thu 2012.08.23)     (1G2AX)

[09:06] Terry Longstreth: Big data characterized by Size, by Complexity, by SxC?     (1G2AY)

[09:08] Terry Longstreth: A characteristic of big systems is the fuzziness of the boundaries; does     (1G2AZ)

the same hold for big data?     (1G2AAA)

[09:10] Todd Schneider: Ken, when the phrase 'big data' is used I haven't seen qualification to the     (1G2AAB)

number of sources. Perhaps there's an implicit assumption of a single source.     (1G2AAC)

[09:11] Ken Baclawski: When we talk about Big Data and OOR, there are two different problems: a     (1G2AAD)

relatively small number of large complex ontologies (as in BioPortal which has ontologies with     (1G2AAE)

millions of concepts) or a very large number (on the order of millions) of relatively simple     (1G2AAF)

ontologies (e.g., the fields of a CSV file).     (1G2AAG)

[09:19] Todd Schneider: Ken, Okay there may be performance issues when the number of ontologies     (1G2AAH)

becomes large.     (1G2AAI)

[09:18] Terry Longstreth: Challenge for OOR would seem to be more towards complexity rather than size     (1G2AAJ)

of a Big Data environment     (1G2AAK)

[09:20] Mike Bennett: Open linked data marketing issue: so all these governments that are putting out     (1G2AAL)

RDF linked data on the basis of the benefits of semantics: are they aware of the available     (1G2AAM)

ontologies (per OOR) so that they start to use existing ontologies as the conceptual model from     (1G2AAN)

which to structure new and future open linked data outputs.     (1G2AAO)

[09:20] Mike Bennett: This also requires an awareness of the role of an ontology AS a conceptual     (1G2AAP)

model - many folks are simply not aware of basic top down modeling best practice.     (1G2AAQ)

[09:22] Michael Grüninger: Two different kinds of applications of OOR: 1) using ontologies within OOR     (1G2AAR)

together with existing data sets e.g. integration, decision support. 2) using ontologies within OOR     (1G2AAS)

to design new data sets or redesign existing data sets     (1G2AAT)

[09:27] Mike Dean: As part of "moving to the cloud", many organizations are moving from relational     (1G2AAU)

databases to map/reduce frameworks such as Hadoop. Can ontologies be used to assist with or guide     (1G2AAV)

such migration?     (1G2AAW)

[09:30] Todd Schneider: Have to go. Cheers.     (1G2AAX)

[09:37] Ken Baclawski: Big Data also involves format conversion issues as well as semantics     (1G2AAY)

(e.g., integer vs floating point, image formats).     (1G2AAZ)

[09:39] Mike Bennett: OOR: would not include metadata about data formats (how could it?) but there is     (1G2AAAA)

a role for some demonstration of description of how to use this stuff, as part of the usage of OOR     (1G2AAAB)

in that scenario.     (1G2AAAC)

[09:39] Ken Baclawski: Clarify these terms: data registry, data repository, ontology registry,     (1G2AAAD)

ontology repository.     (1G2AAAE)

[09:40] Mike Bennett: Also clarify how these different moving parts may be framed in terms of the     (1G2AAAF)

Zachman Framework or some similar formal development framework.     (1G2AAAG)

[09:40] Terry Longstreth: The loss of meaning in data conversions should be part of the ontology     (1G2AAAH)

[09:41] Terry Longstreth: ...perhaps a separate micro-theory about data formats and lossy vs.     (1G2AAAI)

lossless conversions     (1G2AAAJ)

[09:44] Mike Bennett: Incompatible data sources: what ontologies are for.     (1G2AAAK)

[09:47] Mike Dean: http://icpsr.umich.edu is a large repository of social science data     (1G2AAAL)

[09:47] Ken Baclawski: I suggest as an action item: capture the use cases we just identified.     (1G2AAAM)

[09:48] Mike Dean: Most domains/projects seem to have their own data registries     (1G2AAAN)

[09:58] Terry Longstreth: Are we agreed that Big Data for OOR is primarily an issue of complexity of     (1G2AAAO)

the target relationships?     (1G2AAAP)

[10:00] Terry Longstreth: Apparently no consensus yet     (1G2AAAQ)

[10:01] Mike Bennett: Or is it "Data that is Big" v "Big data architecture" i.e. Hadoop / Mapreduce.     (1G2AAAR)

Both seemed relevant according to today's conversation.     (1G2AAAS)

[10:04] Peter P. Yim: as long as we are not arguing about what "Big Data" is ... and we know our     (1G2AAAT)

objective is to tackle how OOR can "serve" Big Data, I think we are fine (at least for now; until we     (1G2AAAU)

need to tackle at finer granularity)     (1G2AAAV)

[10:12] Peter P. Yim: assuming we have consensus on putting a focus on "OOR for Big Data" (along with     (1G2AAAW)

what we have been doing so far with OOR), we might want to: (a) identify the data, use case(s) and     (1G2AAAX)

one or two community(ies) we want to work closely with, to take this effort to the next level, (b)     (1G2AAAY)

figure out what we need to be doing differently (from this point onwards) for OOR     (1G2AAAZ)

[10:21] Peter P. Yim: Following event dates confirmed     (1G2AAAAA)

(... incorporating consensus arrived with email exchanges after the session as well)     (1G2AAAAC)

the next major release of the BioPortal vm appliance)     (1G2AAAAO)

[10:04] Peter P. Yim: great session!     (1G2AAAAP)

[10:05] Peter P. Yim: -- session ended: 10:03am PDT --     (1G2AAAAQ)

-- end of in-session chat-transcript --     (1G2AAAAR)

  • Further Question & Remarks - please post them to the [ oor-forum ] listserv     (1G2AAAAS)
    • all subscribers to the previous summit discussion, and all who responded to today's call will automatically be subscribed to the [ oor-forum ] listserv     (1G2AAAAS1)
    • if you are already subscribed, post to <oor-forum [at] ontolog.cim3.net>     (1G2AAAAS2)
    • Also, if you are not yet a member of the Ontolog community (i.e. if you are not yet subscribed to the [ontolog-forum] list) , you might consider become a member of the community. Please refer to membership details here.     (1G2AAAAS3)

Additional Resources     (1H)


For the record ...     (1H8)

How To Join (while the session is in progress)     (1I)


This page has been migrated from the OntologWiki - Click here for original page     (1I4)