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= [[OpenOntologyRepository]]: OOR Development Workshop-VIII - Tue 2012_05_22 =
= [[OpenOntologyRepository]]: OOR Content Workshop-II - Tue 2012_05_29 =


This is our 8th OOR-dev workshop, a workshop series devoted to the discussion and synchronization of the various development efforts toward the OOR system and platform. Among other agenda items, this workshop will provide the opportunity for code contributors to compare notes on "adding tabs" (as a follow-up to our last OOR Architecture & API Workshop - [[OOR/ConferenceCall_2012_05_08]] - devoted to discussing the merits of "tabs" and other related issues.)
This is our 2nd OOR-content workshop, an effort to pick up from where we left off more than 2 years ago, to put focus on bringing together the user communities, who would be putting ontology contents into OOR instances, and to see how the OOR design and implementation can best serve their needs. This session will be devoted specifically to coordinating content among various OOR instances.  


Topic: '''Getting OOR Development Going - Take-VIII'''  
Topic: '''OOR Content Workshop-II: "Coordinating Content among various OOR instances"'''  


Session Chair: [[MikeDean|Mike Dean]] (Raytheon-BBN)  
Session Chair: '''MichaelGruninger''' (U of Toronto) & '''MikeDean''' (Raytheon-BBN)  


... ''please refer also to proceedings from the last workship on this OOR-dev series at [[OOR/ConferenceCall_2012_02_28]]''  
... ''please also refer to proceedings from the last OOR workshop on "contents" at [[OOR/ConferenceCall_2010_03_12]]''  


=== [[MeetingsCalls|Conference Call]] Details  ===
=== [[MeetingsCalls|Conference Call]] Details  ===


* Date: '''Tuesday, 22-May-2012'''  
* Date: '''Tuesday, 29-May-2012'''  
* Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 15:30 UTC  
* Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 15:30 UTC  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=5&day=22&year=2012&hour=8&min=30&sec=0&p1=224 World Clock]  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=5&day=29&year=2012&hour=8&min=30&sec=0&p1=224 World Clock]  
* Expected Call Duration: ~1.5 hours  
* Expected Call Duration: ~1.5 hours  


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** people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the '''[ slides]''' (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.  
** people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the '''[ slides]''' (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.  


* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20120522
* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20120529


* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  
* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  


* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_05_22
* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_05_29


* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
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* Attended:  
* Attended:  
** [[MikeDean|Mike Dean]] (chair)  
** [[MichaelGruninger|Michael Grüninger]] (co-chair)  
** [[PeterYim|Peter P. Yim]] (scribe)  
** [[PeterYim|Peter P. Yim]] (scribe)  
** [[TerryLongstreth|Terry Longstreth]]
** [[BobSmith|Bob Smith]]
** [[User:KennethBaclawski|Ken Baclawski]]  
** [[User:KennethBaclawski|Ken Baclawski]]  
** [[ToddSchneider|Todd Schneider]]
** [[MikeBennett|Mike Bennett]]  
** [[TimDarr|Tim Darr]]  
** [[RaviSharma|Ravi Sharma]]  
** [[RaviSharma|Ravi Sharma]]  
** [[MikeDean|Mike Dean]] (co-chair)
** [[PavithraKenjige|Pavithra Kenjige]]


* Expecting:  
* Expecting:  
**   
*   
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  


* Regrets:  
* Regrets:  
** [[MikeBennett|Mike Bennett]]
** [[GaryBergCross]] (have conflict)
** [[MichaelGruninger|Michael Gr&uuml;ninger]]  
** ...  
** ...  


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''please insert any additional items below (along with your name for follow-up purposes)''  
''please insert any additional items below (along with your name for follow-up purposes)''  


* code contributors to compare notes on "adding tabs"
* discussion: who are the content contributors we want to target, in the short and medium term?
* discussion on how we can continue to engage the other potential code contributors
* coordinating specific content contribution cases:  
* review our code development focus and direction, to make sure we stay relevant to external changes and standardization efforts (especially in light of recent trends in related work):  
** MikeBennett's work on financial industry related ontologies
** "big data"
** SOCoP's work on geospatial ontologies
** Linked Open Data (LOD)
** open government data, ... etc.
** graph-based search/computation
* discussion on how we can engage content contributor communities and systematically build up the user-base
* [[PeterYim|Peter P. Yim]]: coordinate near-term and medium term OOR development efforts
* how could we best coordinate code development and content development  


* ...  
* ...  
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== Agenda & Proceedings  ==
== Agenda & Proceedings  ==


'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-dev/ Archives]:'''  
'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-content/ Archives]:'''  


* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-dev/OOR-dev-VIII_20120522b.mp3 audio recording of the session] [ 1:11:07 ; mp3 ; 8.14 MB ]  
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-content/OOR-content-II_20120529b.mp3 audio recording of the session] [ 1:25:16 ; mp3 ; 9.76 MB ]  
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-dev/oor_chat-transcript_20120522b.txt chat-transcript of this session]  
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-content/oor-content-02_chat-transcript_20120529b.txt chat-transcript of this session]  


1. Meeting called to order:  
1. Meeting called to order:  


* [[MikeDean|Mike Dean]] takes the chair and welcomes everyone  
* [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[MikeDean|Mike Dean]] take the chair and welcomes everyone  
* [[PeterYim|Peter P. Yim]] volunteered to take notes  
* [[PeterYim|Peter P. Yim]] volunteered to take notes  
* review and adopt agenda  
* review and adopt agenda  
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2. Roll Call:  
2. Roll Call:  


* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_05_22#nid3BI4 above]  
* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_05_29#nid3BOL above]  
* welcome and intro of new member(s) (if applicable)  
* welcome and intro of new member(s) (if applicable)  


3. '''Key items for review and discussion today:'''  
3. '''Key items for review and discussion today:'''  


* '''code contributors to compare notes on "adding tabs"'''
* Current OOR instances: http://oor.net
** [[MikeDean|Mike Dean]]: have not had a chance to do actual work, but did review PaulAlexander's updated documentation, which seems to be quite comprehensive now - see: http://palexander.posterous.com/extending-bioportals-rails-ui
 
** [[User:KennethBaclawski|Ken Baclawski]]: Maximo's "Keeper" was in SOAP, while [[BioPortal]] web-services is RESTful  ... I (Ken) have code that can handle both SOAP and REST
http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository
*** Ken & Maximo will deploy that code to, in a sense, re-implement the despatch mechanism, which will be able to take care of this (REST vs. SOAP) problem ... the plan will be to have this code being independent of the [[BioPortal]] codebase


* '''discussion on how we can continue to engage the other potential code contributors'''  
* Discussion: '''who are the content contributors we want to target, in the short and medium term?'''  
** possibilities -
*** [[ToddSchneider|Todd Schneider]]: tried, a while back, STIDS - tried to engage [[KathyLaskey|Kathy Laskey]]
*** [[TimDarr|Tim Darr]] - may have a resource in a month or so; will see
*** [[MikeDean|Mike Dean]]: SOCoP - [[NaijunZhou|Naijun Zhou]] from UMD may have something to contribute; Mike will talk to him to explore possibilities


* '''review our code development focus and direction, to make sure we stay relevant''' to external changes and standardization efforts (especially in light of recent trends in related work):
* '''coordinating specific content contribution cases:'''  
** "big data"
** MikeBennett's work on financial industry related ontologies
** Linked Open Data (LOD)
** SOCoP's work on geospatial ontologies
** graph-based search/computation
** open government data, ... etc.  
*** [[MikeDean|Mike Dean]] / [[PeterYim|Peter P. Yim]]: Related work:  OData, GData, Google Knowledge Graph, Cray - <nowiki>u[[RiKA]]</nowiki>, Neo4J
* Focus Questions:  
**** OData (http://en.wikipedia.org/wiki/Open_Data_Protocol & http://ontolog.cim3.net/forum/ontolog-forum/2012-05/msg00056.html )
** What ontologies have you designed?
**** GData (http://en.wikipedia.org/wiki/GData )
** What ontologies have you reused?
**** - ref. http://ontolog.cim3.net/forum/ontolog-forum/2012-05/msg00028.html
** What ontologies do you need?
**** Cray - <nowiki>u[[RiKA]]</nowiki> (Universal RDF Integration Knowledge Appliance) - see: http://www.hpcwire.com/hpcwire/2012-03-01/cray_parlays_supercomputing_technology_into_big_data_appliance.html
* '''discussion on how we can engage content contributor communities and systematically build up the user-base'''
**** Neo4J - ref. thread: http://ontolog.cim3.net/forum/ontolog-forum/2012-04/msg00086.html - [[DuaneNickull|Duane Nickull]] is organizing an Ontolog session on this
** [[User:KennethBaclawski|Ken Baclawski]] / [[PeterYim|Peter P. Yim]]: even a little reason, when applied to huge amount of data that touches a huge user-base, could make a lot of impact
** Possibilities:
*** [[MikeDean|Mike Dean]]: One approach is to export and/or ontologies to some of these new formats.
*** [[PeterYim|Peter P. Yim]] / [[MikeDean|Mike Dean]]: OOR ontologies could become the lingua franca for mapping in various domains.


* '''coordinate near-term and medium term OOR development efforts'''  
* '''how could we best coordinate code development and content development'''  


4. Revisiting our "'''[[OpenOntologyRepository|Most Critical Tasks At Hand]]'''" list ...(which we haven't reviewed for a while now) ... defer to our next OOR-Team call 2012_06_12
4. Event Planning: ''(we need to tie down events for 6/19 & 6/26)''


* see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH
* Tue 2012_06_19 - "OOR for Big Data - I" - chair: [[MikeDean|Mike Dean]]
* Tue 2012_06_26 - OOR-Content-III - co-chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[MikeDean|Mike Dean]]
* Tue 2012_07_03 - regular monthly OOR Team meeting


5. Schedule Next Meeting & Adjourn:  
5. Schedule Next Meeting & Adjourn:  


* Next Meetings:  
* Next Meetings:  
** 2012_05_29 - OOR-Content-II - Tue 2012.05.29 - Co-chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[MikeDean|Mike Dean]]
** 2012_06_05 - no OOR meeting, [[SemTech|SemTech]] will be in session  
** 2012_06_05 - no OOR meeting, [[SemTech|SemTech]] will be in session  
** 2012_06_12 - next Regular OOR Team meeting - first Tuesday of the month - [[OOR/ConferenceCall_2012_06_12]]  
** 2012_06_12 - next Regular OOR Team meeting - first Tuesday of the month - [[OOR/ConferenceCall_2012_06_12]]  
** ... please mark your calendars and come!  
** ... please mark your calendars and come!  


* Call adjourned at: 9:50 am PDT  
* Call adjourned at: 10:03 am PDT  


--
--


notes taken by: [[PeterYim|Peter P. Yim]] / 2012.05.22-9:59am PDT
notes taken by: [[PeterYim|Peter P. Yim]] / 2012.05.29-7:01pm PDT


All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
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* '''"Ontology Repository" Definition''' - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"  
* '''"Ontology Repository" Definition''' - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"  
* '''Team mailling list:'''  
* '''Team mailling list:'''  
** OOR-Team discussion: [ [http://ontolog.cim3.net/forum/oor-forum/ oor-forum] ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/  
** OOR-Team discussion: '''[ [http://ontolog.cim3.net/forum/oor-forum/ oor-forum] ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/  
** OOR-Users discussion and support: [ [http://ontolog.cim3.net/forum/oor-users/ oor-users] ]''' message archives - http://ontolog.cim3.net/forum/oor-users/  
** OOR-Users discussion and support: '''[ [http://ontolog.cim3.net/forum/oor-users/ oor-users] ]''' message archives - http://ontolog.cim3.net/forum/oor-users/  
** Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' message archives - http://ontolog.cim3.net/forum/oor-dev/  
** Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' message archives - http://ontolog.cim3.net/forum/oor-dev/  
* proceedings of our '''[[OpenOntologyRepository|previous meetings, panel discussions and workshops]]'''  
* proceedings of our '''[[OpenOntologyRepository|previous meetings, panel discussions and workshops]]'''  
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** 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2011_11_22]]  
** 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2011_11_22]]  
** 2012_02_28 - Tuesday: "Getting OOR Development Going - Take-VII" Workshop - Chair: [[User:KennethBaclawski|Ken Baclawski]] - [[OOR/ConferenceCall_2012_02_28]]  
** 2012_02_28 - Tuesday: "Getting OOR Development Going - Take-VII" Workshop - Chair: [[User:KennethBaclawski|Ken Baclawski]] - [[OOR/ConferenceCall_2012_02_28]]  
** 2012_05_22 - Tuesday: "Getting OOR Development Going - Take-VIII" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2012_05_22]]


*   
*   
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*   
*   
** 2011_12_13 - Tuesdayday: OOR Infrastructure Workshop - Chair: [[PeterYim|Peter P. Yim]] - [[OOR/ConferenceCall_2011_12_13]]  
** 2011_12_13 - Tuesdayday: OOR Infrastructure Workshop - Chair: [[PeterYim|Peter P. Yim]] - [[OOR/ConferenceCall_2011_12_13]]  
** 2010_03_12 - Friday: OOR Content Workshop-I - Co-chairs: [[PatCassidy|Pat Cassidy]] & [[DeniseBedford|Denise Bedford]] - [[OOR/ConferenceCall_2010_03_12]]
** 2012_05_22 - Tuesday: OOR Content Workshop-II - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2012_05_29]]


* the '''OOR-IPR mini-series''':  
* the '''OOR-IPR mini-series''':  

Latest revision as of 07:36, 9 January 2016

OpenOntologyRepository: OOR Content Workshop-II - Tue 2012_05_29

This is our 2nd OOR-content workshop, an effort to pick up from where we left off more than 2 years ago, to put focus on bringing together the user communities, who would be putting ontology contents into OOR instances, and to see how the OOR design and implementation can best serve their needs. This session will be devoted specifically to coordinating content among various OOR instances.

Topic: OOR Content Workshop-II: "Coordinating Content among various OOR instances"

Session Chair: MichaelGruninger (U of Toronto) & MikeDean (Raytheon-BBN)

... please also refer to proceedings from the last OOR workshop on "contents" at OOR/ConferenceCall_2010_03_12

Conference Call Details

  • Date: Tuesday, 29-May-2012
  • Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 15:30 UTC
  • Expected Call Duration: ~1.5 hours
  • Dial-in:
    • Phone (US): +1 (206) 402-0100 (long distance cost may apply)
      • ... [ backup nbr: (415) 671-4335 ]
    • Skype: joinconference ... generally free-of-charge, when connecting from your computer)
    • when prompted enter PIN: 141184#
  • Shared-screen support (VNC session), if applicable, will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/
    • view-only password: "ontolog"
    • if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.
    • people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the [ slides] (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.
  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.

Attendees

  • Expecting:
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...

Agenda Ideas

please insert any additional items below (along with your name for follow-up purposes)

  • discussion: who are the content contributors we want to target, in the short and medium term?
  • coordinating specific content contribution cases:
    • MikeBennett's work on financial industry related ontologies
    • SOCoP's work on geospatial ontologies
    • open government data, ... etc.
  • discussion on how we can engage content contributor communities and systematically build up the user-base
  • how could we best coordinate code development and content development
  • ...

Agenda & Proceedings

Archives:

1. Meeting called to order:

2. Roll Call:

  • see above
  • welcome and intro of new member(s) (if applicable)

3. Key items for review and discussion today:

http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

  • Discussion: who are the content contributors we want to target, in the short and medium term?
  • coordinating specific content contribution cases:
    • MikeBennett's work on financial industry related ontologies
    • SOCoP's work on geospatial ontologies
    • open government data, ... etc.
  • Focus Questions:
    • What ontologies have you designed?
    • What ontologies have you reused?
    • What ontologies do you need?
  • discussion on how we can engage content contributor communities and systematically build up the user-base
  • how could we best coordinate code development and content development

4. Event Planning: (we need to tie down events for 6/19 & 6/26)

  • Tue 2012_06_19 - "OOR for Big Data - I" - chair: Mike Dean
  • Tue 2012_06_26 - OOR-Content-III - co-chair: Michael Grüninger & Mike Dean
  • Tue 2012_07_03 - regular monthly OOR Team meeting

5. Schedule Next Meeting & Adjourn:

  • Next Meetings:
    • 2012_06_05 - no OOR meeting, SemTech will be in session
    • 2012_06_12 - next Regular OOR Team meeting - first Tuesday of the month - OOR/ConferenceCall_2012_06_12
    • ... please mark your calendars and come!
  • Call adjourned at: 10:03 am PDT

--

notes taken by: Peter P. Yim / 2012.05.29-7:01pm PDT

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.


Resources

  • the OOR-IPR mini-series:
    • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
    • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
    • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
  • the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
    • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
    • 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: Elisa Kendall on "Ontology-Related Metadata Standards" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_11_03