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= Joint [[NCBO]]-[[OOR]] Workshop: "BioPortal and OOR Synergies" - Tue 29-Nov-2011 =
= [[OpenOntologyRepository]]: OOR Team Conference Call - Tue 2011_12_06 =


Topic: "'''OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies'''"
This is a regular OOR Team meeting. ... ''please refer to proceedings from the last team meeting at [[OOR/ConferenceCall_2011_11_01]]''  


Session Co-chairs: '''Professor KenBaclawski''' and '''Dr. ToddSchneider'''
=== [[MeetingsCalls|Conference Call]] Details  ===


Discussant: '''Dr. Ray Fergerson''' [ [http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/OOR-BioPortal-Architecture-and-Plans--RayFergerson_20111129.pdf slides] ]
* Date: '''Tuesday, 6-Dec-2011'''  
* Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=12&day=6&year=2011&hour=8&min=30&sec=0&p1=224 World Clock]
* Expected Call Duration: 1.0~1.5 hours


== Abstract  ==
* Dial-in:
** '''Phone (US): +1 (206) 402-0100''' (long distance cost will apply)
** '''Skype: joinconference'''
** when prompted enter '''PIN: 141184#'''


Topic: "'''OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies'''"
* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20111206


:'''This workshop will examine the current differences between [[BioPortal]] and OOR requirements and draft architecture and address the plan of action to extend [[BioPortal]] to satisfy the OOR requirements.'''
* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)


: '''The session will revolve around the following two subjects:'''
* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_12_06


: 1. '''BioPortal - OOR Differences: Current & Future'''
* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].
: 2. '''How to extend [[BioPortal]] to meet OOR Goals'''


== Agenda Proceedings ==
== Attendees ==


'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/ Archives]:'''
* Attended:
** [[MikeDean|Mike Dean]] (chair)
** [[MichaelGruninger|Michael Grüninger]]
** [[PeterYim|Peter P. Yim]]
** [[ToddSchneider|Todd Schneider]]
** [[BrianDavis|Brian Davis]]  


* '''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/OOR-BioPortal-Architecture-and-Plans--RayFergerson_20111129.pdf Fergerson slides]'''  
* Expecting:
* '''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/NCBO-OOR-synergies_20111129b.mp3 audio recording of the session]''' [ 1:24:22 ; MP3 ; 9.66MB ]
** [[LeoObrst|Leo Obrst]]
* '''[http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_29#nid2ZGC chat-transcript of this session]'''
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  


1. Meeting called to order:  
* Regrets:  
** [[User:KennethBaclawski|Ken Baclawski]]


* [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] took the chair and welcome everyone
== Agenda Ideas  ==
* review and adopt agenda
* [[PeterYim|Peter P. Yim]] volunteered to take notes


2. Roll Call:
''please insert any additional items below (along with your name for follow-up purposes)''


* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_29#nid2ZF6 above]
* OOR-sandbox status update
* post-mortem of recent OOR sessions
* Member activities updates
* planning and coordination on upcoming OOR events
* Getting us to a stage when we can run a OOR-production box
* action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding)
* action planning for "soliciting" content (getting people to upload ontologies)
* ...  


* welcome and intro of new member(s) (as needed)
== Agenda & Proceedings  ==


3. Key items for review and discussion today:  
'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/ Archives]:'''


Topic: "'''OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies'''"
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/OOR-team-conf-call_20111206b.mp3 audio recording of the session] [ 1:13:15 ; mp3 ; 8.4 MB ]
* [ chat-transcript of this session] ''(... no pertinent chat content for this call)''  


3.1  "'''BioPortal - OOR Differences: Current & Future'''" - (RayFergerson et al.)
1. Meeting called to order:  


3.2  "'''How to extend [[BioPortal]] to meet OOR Goals'''" - (All)
* [[MikeDean|Mike Dean]] takes the chair and welcome everyone
* review and adopt agenda
* [[PeterYim|Peter P. Yim]] volunteered to take notes


* ([http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_22#nid2ZA2 ref.] suggested) Issues we could discuss at this joint NCBO-OOR session
2. Roll Call:  
** BioPortal's Roadmap or priorities
** [[PeterYim|Peter P. Yim]]: aligning [[BioPortal]] & OOR architecture and API to create and maximize synergies
** clearly identify functionalities that either the NCBO or the OOR development team will be pursuing
*** federation (BBN is happy to contribute their earlier code)
** which specific [http://www.eclipse.org/webtools/ "WebTools" package](s) is [[PaulAlexander|Paul Alexander]] using
** status of export/import/upgrade process for NCBO appliance
** availability of Java, Ruby, or other client stubs for invoking [[BioPortal]] REST services


3.3  '''Discussion Notes'''
* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_01#nid2Y0M above]


3.4  '''Transcript of the online chat during the session'''
* welcome and intro of new member(s) (as needed)


see raw transcript [http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/oor_chat-transcript_unedited_20111129b.txt here].
3. Status Review and Discussion:  


(for better clarity, the version below is a [http://ontolog.cim3.net/file/work/OpenOntologyRepository/2011-11-29_BioPortal-OOR-Synergies/oor_chat-transcript_edited_20111129c.txt re-organized and lightly edited chat-transcript].)
* '''Review and update our "Most Critical Task(s) At Hand" list''' ...(''we will skip this stock agenda item at today's call.)''
** ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH


Participants are welcome to make light edits to their own contributions as they see fit.  
=== 4. Key items for review and discussion today  ===


-- begin of chat session --  
* OOR-sandbox, devbox and socop-box status update ... [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_12_06#nid2ZZ3 below]
** Peter reported status of the OOR-sandbox install issues, which should be close to being resolved


[[PeterYim|Peter P. Yim]]: Welcome to the  
* [[MikeDean|Mike Dean]] reported back on the SOCoP events last week
** [http://semtechbizdc2011.semanticweb.com/sessionPop.cfm?confid=64&proposalid=4226 Geospatial Data Semantic Interoperability] session at [http://semtechbizdc2011.semanticweb.com [[SemTech]] East]
*** Nancy presented on the [[NsfInterop_Grant|SOCoP-INTEROP]] project
*** Mike presented and showed screenshots of [http://socop.oor.net SOCoP-OOR]
*** lots of discussion
** [[SocopWorkshop2011]] at USGS (Reston, Washington DC Area, 2011.12.02)
*** Nancy presented on the [[NsfInterop_Grant|SOCoP-INTEROP]] project
*** Mike presented on OOR and showed a live demo of [http://socop.oor.net SOCoP-OOR] with more ontologies using ncbo-appliance-0.3 on his laptop
*** USGS has a [[GeoSPARQL]] end point.  See http://cegis.usgs.gov/ontology.html
** upcoming events
*** SOCoP will be presenting at the NSF INTEROP PI Meeting in Indianapolis, January 25-27, 2012 ... hope the OORs will be up by then (early enough for prep work, obviously)
*** [http://vocamp.org/wiki/GeoVoCampSB2012 [[GeoVoCamp]] Santa Barbara 2012] will be held Feb 3-5, 2012


= Joint NCBO-OOR Workshop: "BioPortal and OOR Synergies" - Tue 29-Nov-2011 =
* post-mortem of recent OOR sessions
** "Ontologies and Standards" mini-series session-1 & 2 - [[ConferenceCall_2011_10_20|[[OntoIOp]]]] & [[ConferenceCall_2011_11_03|ElisaKendall]]
** "Getting OOR Development Going" Take V & VI - [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_08 on Eclipse] & [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_22 on BioPortal]
** 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Discussant: [[RayFergerson|Ray Fergerson]] - [[OOR/ConferenceCall_2011_11_29]]


Topic: "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies"  
* planning and coordination on upcoming OOR events
** 2011_12_13 - Tuesday: OOR Metadata Workshop-V - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] ... inviting HaroldSolbrig+[[SherriDeCoronado]] and [[MikeBennett|Mike Bennett]] ... this was subsequently postponed, as one of the speakeers will be traveling on that date. A new date will be announced once this has been re-scheduled.
** 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[JohnBateman|John Bateman]] <-- this will be postponed, [[FabianNeuhaus|Fabian Neuhaus]] helping champion this session
** ... lining up more?


Session Co-chairs: Professor [[User:KennethBaclawski|Ken Baclawski]] and Dr. [[ToddSchneider|Todd Schneider]]
* Member activities updates ... [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_12_06#nid300H below] ...(''we will skip this stock agenda item at today's call.)''


Discussant: Dr. Ray Fergerson
* Getting us to a stage when we can run a OOR-production box ...(''we will skip this stock agenda item at today's call.)''


Session page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_29
* action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding) ...(''we will skip this stock agenda item at today's call.)''


Phone keypad controls: To un-mute, press "*7" ... To mute, press "*6"
* action planning for "soliciting" content (getting people to upload ontologies) ...(''we will skip this stock agenda item at today's call.)''


== Proceedings: ==
... ''Notes below are from previous meeting(s), and will be updated as this meeting progresses.''


anonymous morphed into Gilberto Fragoso
* Discussion: the [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_15#nid2VYW newly adopted dual-track OOR approach]
** action planning
*** we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
**** [1] this will be a straight forward, and updated [[BioPortal]] code install, with customization only for: the logo, the IP / License statement, categories.
**** [2] this will be the instance we use to continue the current work of further development in Architecture, API, metadata, CL support, etc.
**** consensus: both instances would use the same database (so ontologies uploaded are accessible by both instances, and are obviously "in sync" ... saving us the need to "import" as we ad discussed at the last meeting)
*** Peter: the next things to push is to have "gatekeeping" in place so we can stand up a "production" OOR
* OOR-sandbox and OOR-devbox status update
** new OOR logo now on the OOR-Sandbox - see: http://sandbox.oor.net
** NCBO [[BioPortal]] v3.3 released on 2011.10.19 - ref. http://ontolog.cim3.net/forum/oor-forum/2011-10/msg00027.html
** Xen vm image of the latest NCBO Appliance almost ready (as of our 2011.10.31 communication with the NCBO team)
** <support@oor.net> mail forwarder created:
*** people can just mail this address or enter into "Send Feedback" form on the OOR Sandbox
*** which currently gets forwarded to: [[TejasParikh|Tejas Parikh]], [[User:KennethBaclawski|Ken Baclawski]], [[MikeDean|Mike Dean]], [[PeterYim|Peter P. Yim]] and <oor-users@ontolog.cim3.net>  ''(--PeterYim/2011.10.14)''
*** remember to tweak this too, after the new vm image is in place - ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR_SandBox_Customization#nid2X3C
* assessing a strengthened OOR-NCBO collaborative relationship
* OOR-sandbox and OOR-devbox status update
** http://oor-01.cim3.net/ - now: http://sandbox.oor.net/ --> to become our OOR-devbox (OOR development server)
** http://oor-02.cim3.net/ - to be designated: http://sandbox.oor.net/
* Status and action review: OOR-dev box - http://oor-03.cim3.net
* Status and action review: SOCoP presentation box - http://socop.oor.net (at BBN?)


[[MikeRiben|Mike Riben]]: mike riben listening in on skype
* updating "categories"
** Peter: the ICOM people suggests adding the categories of "standards" and "collaboration" (the latter probably belongs under "Cultural"
** Mike: something like Dublin Core should go under "metadata" - we are adding this category, "process" too
** discussed - see updated "category" list at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W6B
** one can select multiple categories by doing a "ctrl-click" (or "cmd" for Mac users)
** Ken: the software stores "categories" in an OMV ontology, and support a hierarchy of nested categories
*** Mike: there is a GUI interface for adding categories
** All: we probably want to leave it simple (one level) and support "addition of categories" on demand
** Todd: For some categories, e.g., science, subcategories will be needed. Since the provided listing is linear, subcategories could be listed as pairs or triples: Science, Science - Biology, Science-Physics, Science-Physics-Gravitation, etc.
** Leo: we might consider adopting some standard categorization, like what the Library of Congress has put out (maybe not the entire hierarchy, but only the very upper level(s)
* Category list (based on MikeDean's list): (updated 2011.08.05)
** Upper Ontologies
** Standards (for example, Measurement)
** Science (for example, Biomedical)
** Financial
** Government
** Cultural (for example, Social Networking, People)
** Geospatial
** Commercial
** Literature
** Technology
** Provenance
** Defense
** Metadata (for example, OMV, Dublin Core)
** Process (for example, PSL)
** Other


[[MikeRiben|Mike Riben]]: not sure I have a mic
* Getting us to a stage when members can contribute code ... how, ETA?
** ''(discussion 2011.05.06):''
*** an adopted Architecture & API is definitely crucial, but that's not all
** All team members are encouraged to mull over how we can get to that state effectively
*** in particular ... how do we make this a "successful" community-driven, open source project!?
** (discussion 2011.06.03)'' ...


[[PeterYim|Peter P. Yim]]: Hi Michael
* code development on an Eclipse IDE for all?


anonymous morphed into [[CarlosRueda|Carlos Rueda]]
* Code repository - considering "git" or github?


anonymous morphed Deanna Marino
* Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
** ...


anonymous morphed into [[PaulCourtney|Paul Courtney]]
'''Member activities updates:'''


anonymous morphed into [[TrishWhetzel|Trish Whetzel]]  
* Review: members and OOR-related activities (2011.11.01)
** OOR-sandbox status
** code repository status
** NCBO
** NEU
** Raytheon-BBN
** Bremen
** UToronto
** Ryerson
** Mathet
** [[SOCoP_INTEROP]]  
** [[DataONE]]
** [[NeOn]] (KMi and STL)
** ONKI
** KBSI
** MMI
** Use Cases
** Architecture
** API
** Gatekeeping
** production OOR instance
** SIO
** Funding
** ICOM / DERI


[[ToddSchneider|Todd Schneider]]: For those not familiar with OOR requirements or goals, please ask.
'''Action planning for "soliciting" content''' (getting people to upload ontologies)


[[ToddSchneider|Todd Schneider]]: OOR high level requirements: Storing, Management, Governance of Ontologies & Related
5. '''Funding progress:'''


Items; Discovery / Searching Ontologies; Scalable (Parallelism, Federation); Multi-Language Support;
6. '''Any Other Business:'''


Arbitrary Knowledge Domain; Platform Independent
* [[PeterYim|Peter P. Yim]] invited everyone to come to the 2011_12_08 - Thursday: [[OntologySummit2012|Ontology Summit 2012]] (Pre-Launch) Community Input &amp; Planning Session - co-chairs: [[SteveRay|Steve Ray]] &amp; [[PeterYim|Peter P. Yim]] - ConferenceCall_2011_12_08 &nbsp;&nbsp;  


anonymous morphed into [[LinePouchard|Line Pouchard]]
7. '''Action items:'''


[[LinePouchard|Line Pouchard]]: Q about searches: it seems that Boolean searches are not supported for term searches.
8. Schedule Next Meeting & Adjourn:  


Are there plans to support this?
* Next Meetings:
** 2011_12_13 - Tuesday: OOR workshop on "finalizing OOR-sandbox upgrade"  - [[OOR/ConferenceCall_2011_12_13]]
** 2012_01_03 - Tuesday: Regular OOR Team meeting [[OOR/ConferenceCall_2012_01_03]]


[[LinePouchard|Line Pouchard]]: What does it take to make it a big requirement?
* Call adjourned at: 9:51 am PST


[[TrishWhetzel|Trish Whetzel]]: Hi Line - would you like to submit this as a feature request?
--


[[LinePouchard|Line Pouchard]]: Sourceforge bug tracking, sounds good, thanks.
notes taken by: [[PeterYim|Peter P. Yim]] / 2011.12.06-9:54am PST


[[LinePouchard|Line Pouchard]]: Trish, yes I would like to.  
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  


[[TrishWhetzel|Trish Whetzel]]: Ok, I'll submit this as a feature request and as Ray mentioned we'll get this into the
----


development cycle. If you come across any other feature requests or bug reports, feel free to send
== Resources  ==


these to our user support mailing list: support@bioontology.org
* homepage - '''[[OpenOntologyRepository]]''' - http://OpenOntologyRepository.org
* '''[[OpenOntologyRepository|OOR Charter]]''' - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.
* '''"Ontology Repository" Definition''' - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"
* '''Team mailling list:'''
** OOR-Team discussion: [ [http://ontolog.cim3.net/forum/oor-forum/ oor-forum] ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/
** OOR-Users discussion and support: [ [http://ontolog.cim3.net/forum/oor-users/ oor-users] ]''' message archives - http://ontolog.cim3.net/forum/oor-users/
** Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' message archives - http://ontolog.cim3.net/forum/oor-dev/
* proceedings of our '''[[OpenOntologyRepository|previous meetings, panel discussions and workshops]]'''


[[ToddSchneider|Todd Schneider]]: Eric, I see your 'hand' is up. Do you have a question for Ray?
* the '''Joint [[OOR]]-OntologySummit2008 Panel Discussions''':
** 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: [[LeoObrst|Leo Obrst]] & [[FrankOlken|Frank Olken]]; Panelists: [[Bargmeyer|Bruce Bargmeyer]], [[MikeDean|Mike Dean]], Mark Musen, [[FarrukhNajmi|Farrukh Najmi]] & [[PeterYim|Peter P. Yim]] - ConferenceCall_2008_02_28
** 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[WilliamBug|William Bug]], [[EvanWallace|Evan Wallace]], [[JohnLMcCarthy]], [[User:KennethBaclawski|Ken Baclawski]], [[PeterBenson|Peter Benson]] & [[RexBrooks|Rex Brooks]] - ConferenceCall_2008_03_27
** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[DougLenat|Doug Lenat]], [[DekeSmith|Deke Smith]], [[MarciaZeng|Marcia Zeng]], [[DeniseBedford|Denise Bedford]], [[PatHayes|Pat Hayes]], [[MalaMehrotra|Mala Mehrotra]] & [[RobRaskin|Rob Raskin]] - ConferenceCall_2008_04_03
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Gr&uuml;ninger]]; Panelists: [[MichaelGruninger|Michael Gr&uuml;ninger]], [[PeterHaase|Peter Haase]], Natasha Noy & [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10
* the '''OOR Development panel sessions''':
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst|Leo Obrst]]; Panelists: [[MikeDean|Mike Dean]], Mark Musen, [[LiDing|Li Ding]], [[Bargmeyer|Bruce Bargmeyer]] & [[BillAndersen|Bill Andersen]] - ConferenceCall_2008_08_22
** 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: [[ToddSchneider|Todd Schneider]]; Panelists: Mark Musen, Natasha Noy, [[MikeDean|Mike Dean]], [[PaulBuitelaar|Paul Buitelaar]] / [[AndreasHarth|Andreas Harth]], [[MathieuDaquin|Mathieu Daquin]], [[User:KennethBaclawski|Ken Baclawski]], [[MichaelGruninger|Michael Gr&uuml;ninger]] - ConferenceCall_2009_02_19
** 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: Mark Musen - Panelists: [[TaniaTudorache|Tania Tudorache]], [[TimRedmond|Tim Redmond]], Natasha Noy - ConferenceCall_2009_07_16
** 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: Natasha Noy - Panelists: [[CarlosRueda|Carlos Rueda]], [[PaulAlexander|Paul Alexander]], [[JohnGraybeal|John Graybeal]], [[MikeDean|Mike Dean]], StephenGranite, AlexGarcia, [[User:KennethBaclawski|Ken Baclawski]] - ConferenceCall_2009_07_30
** 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: [[MikeDean|Mike Dean]] - Panelists: [[JimChatigny|Jim Chatigny]], [[MichaelGruninger|Michael Gr&uuml;ninger]], [[User:KennethBaclawski|Ken Baclawski]], Natasha Noy - [[OOR/ConferenceCall_2010_02_19]]
** 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Panelists: [[ToddSchneider|Todd Schneider]], [[MatthewHettinger|Matthew Hettinger]], [[User:KennethBaclawski|Ken Baclawski]] and [[MaximoGurmendez|M&aacute;ximo Gurm&eacute;ndez]] - ConferenceCall_2010_04_01
** 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: [[JohnSowa|John F. Sowa]] - Panelists: JohnBateman-TillMossakowski, [[MichaelGruninger|Michael Gr&uuml;ninger]], [[CameronRoss|Cameron Ross]], [[AdamPease|Adam Pease]], [[PatHayes|Pat Hayes]] - ConferenceCall_2010_09_10
** 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: [[ToddSchneider|Todd Schneider]] & [[MichaelGruninger|Michael Gr&uuml;ninger]] - Panelists: [[ToddSchneider|Todd Schneider]], [[MikeDean|Mike Dean]], Natasha Noy, [[ImmanuelNormann|Immanuel Normann]], [[User:KennethBaclawski|Ken Baclawski]], [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2010_09_17]]


Eric S. Chan: Do you consider using an ontology for reification of notes, discussions, reviews,
** 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - [[OOR/ConferenceCall_2010_10_15]]
** 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: [[RayFergerson|Ray Fergerson]] & [[PeterYim|Peter P. Yim]] - [[OOR/ConferenceCall_2011_09_13]]
** 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: [[BioPortal]] & OOR Synergies" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - Discussant: [[RayFergerson|Ray Fergerson]] - [[OOR/ConferenceCall_2011_11_29]]


etc., that can be attached to the Biomedical Ontology? Peter Yim and I had suggested OASIS ICOM
** 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[MichaelGruninger|Michael Gr&uuml;ninger]] - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2010_11_19]]
** 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_03_04]]
** 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_03_11]]
** 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_03_25]]
** 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_04_22]]
** 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_05_20]]
** 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_06_17]]
** 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_09_20]]
** 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_10_11]]


ontology (http://www.oasis-open.org/committees/download.php/44405/icom-ics-v1.0-csprd02.zip) for
** 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: [[MikeDean|Mike Dean]] - "Getting OOR Development going, on Eclipse?" - [[OOR/ConferenceCall_2011_11_08]]
** 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: [[MikeDean|Mike Dean]] - [[OOR/ConferenceCall_2011_11_22]]


reification of collaborative contents in OOR.
** 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_03_18]]
** 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_05_13]]
** 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_05_27]]
** 2011_10_18 - Friday: OOR Metadata Workshop-IV - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_10_18]]
** 2011_12_13 - Tuesday: OOR Metadata Workshop-V - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_12_13]]


[[ToddSchneider|Todd Schneider]]: Eric, can we ask your question when Ray is done with his presentation?
* the '''OOR-IPR mini-series''':
** 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: [[GeorgeStrawn|George Strawn]] - Chair: [[PeterYim|Peter P. Yim]] - Panelists: [[JamieClark]], [[JohnWilbanks|John Wilbanks]], [[BrucePerens|Bruce Perens]] - ConferenceCall_2010_09_09
** 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: [[CameronRoss|Cameron Ross]], [[AlanRector|Alan Rector]], [[JohnSowa|John F. Sowa]], [[BrucePerens|Bruce Perens]], [[JohnWilbanks|John Wilbanks]], [[PeterYim|Peter P. Yim]] - ConferenceCall_2010_09_16
** 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: [[LeoObrst|Leo Obrst]] - Panelists: [[PeterYim|Peter P. Yim]], [[MikeDean|Mike Dean]], [[BrucePerens|Bruce Perens]], [[JamieClark]] - ConferenceCall_2010_09_30


Eric S. Chan: yes, I can ask the question during the Q/A
* the '''Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series''':
** 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability ([[OntoIOp]])" Standardization Effort - Co-chairs: [[JohnBateman|John Bateman]] & [[MichaelGruninger|Michael Gr&uuml;ninger]] - ConferenceCall_2011_10_20
** 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: [[ElisaKendall|Elisa Kendall]] on "Ontology-Related Metadata Standards" - Co-chairs: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[JohnBateman|John Bateman]] - ConferenceCall_2011_11_03
** 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: [[MichaelGruninger|Michael Gr&uuml;ninger]] & [[JohnBateman|John Bateman]] - ConferenceCall_2011_12_15


[[ToddSchneider|Todd Schneider]]: Ray, don't encourage the use of UML.
* '''OntologySummit2008''' homepage
 
[[PeterYim|Peter P. Yim]]: @ALL: for everyone's information Michael Gruninger who champions our OOR-Metadata
 
workshop, is planning one on Dec-13 ... there is plan to invite [[HaroldSolbrig|Harold Solbrig]] (Mayo) over to talk
 
about their recent ontology metadata "crosswalk" study, which, among others, included OMV, CTS2. ...
 
Please mark your calendars ... we'll look forward to having you at the session on Tue 2011.12.13
 
see development details at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_12_13
 
[[MikeBennett|Mike Bennett]]: On notes and annotations, are the bioportal notes ontology items aligned with or
 
reusing concepts in SKOS that relate to notes?
 
[[ToddSchneider|Todd Schneider]]: Mike's query raises an interesting capability, the ability to sufficiently
 
distinguish the domains covered by a particular ontology repository (to support distributed
 
queries).
 
[[ToddSchneider|Todd Schneider]]: Carlos, did you want to ask Ray?
 
[[CarlosRueda|Carlos Rueda]]: My question is just about a topic already in the agenda: "how to extend BioPortal"
 
[[TrishWhetzel|Trish Whetzel]]: While not limited to ontology repositories, but geared more towards the content of
 
triple stores, there is an effort to catalog the contents of triple stores via the dbcatalog group,
 
http://groups.google.com/group/dbcatalog
 
[[PeterYim|Peter P. Yim]]: great session ... thank you, Ray, Todd, Ken and All!
 
[[PeterYim|Peter P. Yim]]: -- session ended: 10:02am PST --
 
-- end of chat session --
 
* Further Question & Remarks - please post them to the [ [http://ontolog.cim3.net/forum/oor-forum/ oor-forum] ] listserv
** if you are already subscribed, post to <oor-forum [at] ontolog.cim3.net>
** (if you are not yet subscribed) you may subscribe yourself to the [ oor-forum ] listserv listserv, by sending a blank email to <oor-forum-join [at] ontolog.cim3.net> from your subscribing email address, and then follow the instructions you receive back from the mailing list system.
 
4. '''Action items:'''
 
5. '''Any Other Business:'''
 
6. Schedule Next Meeting & Adjourn:
 
* Next Meetings:
** 2011_12_06: regular OOR team meeting - [[OOR/ConferenceCall_2011_12_06]]
** 2011_12_13: OOR-metadata workshop take-V - chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_12_13]]
 
* Call adjourned at: 10:02 am PST
 
--
 
notes taken by: [[PeterYim|Peter P. Yim]] / 2011.11.29-___am PST
 
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.
 
----
 
== Resources  ==
 
* '''[[NCBO]] - National Center for Biomedical Ontology''' - http://www.bioontology.org/
* The '''BioPortal''' - http://bioportal.bioontology.org/
* '''[[OpenOntologyRepository]]''' - Homepage for the OOR initiative
* A recent presentation on OOR - [http://ontolog.cim3.net/file/work/OOR/OOR_presentations_publications/OOR-SemTech_Jun2010.pdf OOR Presentation at SemTech2010]
* [[OpenOntologyRepository_IPR]] Policy
* '''[[OpenOntologyRepository_Requirement]]'''
* '''[[OpenOntologyRepository_UseCases]]'''
* '''[[OpenOntologyRepository_Architecture]]'''
* 2011_09_13 - Tuesday: Joint NCBO-OOR Panel Discussion: "Kicking-off the Next Phase of Collaboration"  - Co-chairs: Dr. [[RayFergerson|Ray Fergerson]] & Mr. [[PeterYim|Peter P. Yim]] - Panelists: Professor Mark Musen (NCBO; Stanford), Dr. Natasha Noy (NCBO; Stanford), Dr. [[TrishWhetzel|Trish Whetzel]] (NCBO; Stanford), Dr. [[LeoObrst|Leo Obrst]] (OOR; MITRE), Professor [[User:KennethBaclawski|Ken Baclawski]] (OOR; Northeastern U) & Dr. [[ToddSchneider|Todd Schneider]] (OOR; Raytheon) - [[OOR/ConferenceCall_2011_09_13]]
* 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: Dr. [[ToddSchneider|Todd Schneider]] & Professor [[MichaelGruninger|Michael Gr&uuml;ninger]] - Panelists: Dr. [[ToddSchneider|Todd Schneider]] (Raytheon), Mr. [[MikeDean|Mike Dean]] (Raytheon-BBN), Dr. Natasha Noy (NCBO, Stanford University), Dr. [[ImmanuelNormann|Immanuel Normann]] (Bremen University, BORG), Professor [[User:KennethBaclawski|Ken Baclawski]] (Northeastern University), Professor [[MichaelGruninger|Michael Gr&uuml;ninger]] (University of Toronto) - [[OOR/ConferenceCall_2010_09_17]]
* 2009_10_15 - Thursday: "OOR-BioPortal Comparative Analysis" panel discussion - Chair: [[ToddSchneider|Todd Schneider]] - Panelists: Natasha Noy, MichaelDorf, [[User:KennethBaclawski|Ken Baclawski]], [[ElisaKendall|Elisa Kendall]] & [[MikeDean|Mike Dean]] - ConferenceCall_2009_10_15
* 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: Natasha Noy - Panelists: [[CarlosRueda|Carlos Rueda]], [[PaulAlexander|Paul Alexander]], [[JohnGraybeal|John Graybeal]], [[MikeDean|Mike Dean]], StephenGranite, AlexGarcia, [[User:KennethBaclawski|Ken Baclawski]] - ConferenceCall_2009_07_30
* 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: [[ToddSchneider|Todd Schneider]]; Panelists: Mark Musen, Natasha Noy, [[MikeDean|Mike Dean]], [[PaulBuitelaar|Paul Buitelaar]] / [[AndreasHarth|Andreas Harth]], [[MathieuDaquin|Mathieu Daquin]], [[User:KennethBaclawski|Ken Baclawski]], [[MichaelGruninger|Michael Gr&uuml;ninger]] - ConferenceCall_2009_02_19
* 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst|Leo Obrst]]; Panelists: [[MikeDean|Mike Dean]], Mark Musen, [[LiDing|Li Ding]], [[Bargmeyer|Bruce Bargmeyer]] & [[BillAndersen|Bill Andersen]] - ConferenceCall_2008_08_22
* 2008_04_29 - Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the [[OntologySummit2008|Ontology Summit 2008]] - see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2008/FaceToFaceAgenda#nid1BLS
* 2007_12_06 - Thursday: Invited Speaker - Professor Mark Musen: "If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies" - ConferenceCall_2007_12_06
* '''OntologySummit2008 - "Toward An Open Ontology Repository"'''  
** '''[[OntologySummit2008_Communique]]'''  
** '''[[OntologySummit2008_Communique]]'''  
* our most recent regular OOR-team meeting - [[OOR/ConferenceCall_2011_09_06]]  
** '''[[OntologySummit2008/FaceToFaceAgenda]] & Proceedings'''
* [ [http://ontolog.cim3.net/forum/oor-forum/ oor-forum] ] message archive - http://ontolog.cim3.net/forum/oor-forum/  
** The '''[http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt OOR Project] Presentation''' (delivered at the [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop)
** (if you are not yet subscribed) you may subscribe yourself to the [ [http://ontolog.cim3.net/mailman/listinfo/oor-forum/ oor-forum] ] listserv, by sending a blank email to <oor-forum-join [at] ontolog.cim3.net> from your subscribing email address, and then follow the instructions you receive back from the mailing list system.
* '''[ [http://ontolog.cim3.net/forum/ontology-summit/ ontology-summit] ]''' discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)
** check out our other mailing lists and [[OpenOntologyRepository|join us]]  
* Our key content pages:
** '''[[OpenOntologyRepository_Scope]]'''
** '''[[OpenOntologyRepository_Organization]]'''
** '''[[OpenOntologyRepository_Process]]'''
** '''[[OpenOntologyRepository_Policy]]'''
** '''[[OpenOntologyRepository_IPR]]'''
** '''[[OpenOntologyRepository_Requirement]]'''
** '''[[OpenOntologyRepository_UseCases]]'''
** '''[[OpenOntologyRepository_Architecture]]'''
** '''[[OpenOntologyRepository_Approach]]'''
** '''[[OpenOntologyRepository_Roadmap]]'''
** '''[[OpenOntologyRepository_Plan]]'''
** '''[[OpenOntologyRepository_Funding]]'''
** '''[[OpenOntologyRepository_ResearchIssues]]'''
** '''[[OpenOntologyRepository_ResearchActivity]]'''
** '''[[OpenOntologyRepository_Development]]'''
** '''[[OpenOntologyRepository_Metadata]]'''
* '''[[OOR/ActiveMemberContribution]]'''
* '''OOR Project site at [[SemWebCentral]]''' - http://oor.semwebcentral.org  
* '''OOR Project site at [[SemWebCentral]]''' - http://oor.semwebcentral.org  
* '''Public instances of OOR - http://sandbox.oor.net/ontologies''' (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:  
* '''Public instances of OOR - http://sandbox.oor.net/ontologies''' (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:  
** '''[[OOR_SandBox]]''' - http://oor-03.cim3.net - http://sandbox.oor.net/  
** '''[[OOR_SandBox]]''' - http://oor-03.cim3.net - http://sandbox.oor.net/  
** '''[[OOR_DevBox]]''' - http://oor-01.cim3.net - http://devbox.oor.net/  
** '''[[OOR_DevBox]]''' - http://oor-01.cim3.net - http://dev.oor.net/  
** [[NCBO]] - [http://bioportal.bioontology.org/ BioPortal]
*** BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support  
*** BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support  
** NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
** NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development  
----
''For the record ...''
== How To Join (while the session is in progress)  ==
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=== [[MeetingsCalls|Conference Call]] Details  ===
* Date: '''Tuesday, 29-Nov-2011'''
* Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=11&day=29&year=2011&hour=8&min=30&sec=0&p1=224 World Clock]
* Expected Call Duration: ~1.5 hours
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* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_29
* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].
== Attendees  ==
* Attended:
** [[User:KennethBaclawski|Ken Baclawski]] (co-chair)
** [[ToddSchneider|Todd Schneider]] (co-chair)
** [[RayFergerson|Ray Fergerson]] (discussant)
** [[PeterYim|Peter P. Yim]] (scribe)
** Gilberto Fragoso (NIH/NCI)
** [[MichaelRiben|Michael Riben]]
** [[MikeDean|Mike Dean]]
** [[CarlosRueda|Carlos Rueda]]
** YefimZhuk
** [[MyCoyne]]
** [[BrianDavis|Brian Davis]]
** Deanna Marino
** [[PaulCourtney|Paul Courtney]]
** [[TrishWhetzel|Trish Whetzel]]
** [[LinePouchard|Line Pouchard]]
** [[EricChan|Eric Chan]]
** [[MikeBennett|Mike Bennett]]
* Expecting:
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...
* Regrets:
** [[TimDarr|Tim Darr]]
** [[MichaelGruninger|Michael Gr&uuml;ninger]]


[[Category:Event_Meeting]]    [[Category:OOR]]
[[Category:Event_Meeting]]    [[Category:OOR]]

Latest revision as of 07:34, 9 January 2016

OpenOntologyRepository: OOR Team Conference Call - Tue 2011_12_06

This is a regular OOR Team meeting. ... please refer to proceedings from the last team meeting at OOR/ConferenceCall_2011_11_01

Conference Call Details

  • Date: Tuesday, 6-Dec-2011
  • Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC
  • Expected Call Duration: 1.0~1.5 hours
  • Dial-in:
    • Phone (US): +1 (206) 402-0100 (long distance cost will apply)
    • Skype: joinconference
    • when prompted enter PIN: 141184#
  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.

Attendees

  • Expecting:
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...

Agenda Ideas

please insert any additional items below (along with your name for follow-up purposes)

  • OOR-sandbox status update
  • post-mortem of recent OOR sessions
  • Member activities updates
  • planning and coordination on upcoming OOR events
  • Getting us to a stage when we can run a OOR-production box
  • action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding)
  • action planning for "soliciting" content (getting people to upload ontologies)
  • ...

Agenda & Proceedings

Archives:

1. Meeting called to order:

  • Mike Dean takes the chair and welcome everyone
  • review and adopt agenda
  • Peter P. Yim volunteered to take notes

2. Roll Call:

  • welcome and intro of new member(s) (as needed)

3. Status Review and Discussion:

4. Key items for review and discussion today

  • OOR-sandbox, devbox and socop-box status update ... below
    • Peter reported status of the OOR-sandbox install issues, which should be close to being resolved
  • planning and coordination on upcoming OOR events
    • 2011_12_13 - Tuesday: OOR Metadata Workshop-V - Chair: Michael Grüninger ... inviting HaroldSolbrig+SherriDeCoronado and Mike Bennett ... this was subsequently postponed, as one of the speakeers will be traveling on that date. A new date will be announced once this has been re-scheduled.
    • 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: Michael Grüninger & John Bateman <-- this will be postponed, Fabian Neuhaus helping champion this session
    • ... lining up more?
  • Member activities updates ... below ...(we will skip this stock agenda item at today's call.)
  • Getting us to a stage when we can run a OOR-production box ...(we will skip this stock agenda item at today's call.)
  • action planning for facilitating code contribution (organizing ourselves so various sub-teams can actually get to work on coding) ...(we will skip this stock agenda item at today's call.)
  • action planning for "soliciting" content (getting people to upload ontologies) ...(we will skip this stock agenda item at today's call.)

... Notes below are from previous meeting(s), and will be updated as this meeting progresses.

  • Discussion: the newly adopted dual-track OOR approach
    • action planning
      • we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
        • [1] this will be a straight forward, and updated BioPortal code install, with customization only for: the logo, the IP / License statement, categories.
        • [2] this will be the instance we use to continue the current work of further development in Architecture, API, metadata, CL support, etc.
        • consensus: both instances would use the same database (so ontologies uploaded are accessible by both instances, and are obviously "in sync" ... saving us the need to "import" as we ad discussed at the last meeting)
      • Peter: the next things to push is to have "gatekeeping" in place so we can stand up a "production" OOR
  • OOR-sandbox and OOR-devbox status update
  • assessing a strengthened OOR-NCBO collaborative relationship
  • OOR-sandbox and OOR-devbox status update
  • Status and action review: OOR-dev box - http://oor-03.cim3.net
  • Status and action review: SOCoP presentation box - http://socop.oor.net (at BBN?)
  • updating "categories"
    • Peter: the ICOM people suggests adding the categories of "standards" and "collaboration" (the latter probably belongs under "Cultural"
    • Mike: something like Dublin Core should go under "metadata" - we are adding this category, "process" too
    • discussed - see updated "category" list at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W6B
    • one can select multiple categories by doing a "ctrl-click" (or "cmd" for Mac users)
    • Ken: the software stores "categories" in an OMV ontology, and support a hierarchy of nested categories
      • Mike: there is a GUI interface for adding categories
    • All: we probably want to leave it simple (one level) and support "addition of categories" on demand
    • Todd: For some categories, e.g., science, subcategories will be needed. Since the provided listing is linear, subcategories could be listed as pairs or triples: Science, Science - Biology, Science-Physics, Science-Physics-Gravitation, etc.
    • Leo: we might consider adopting some standard categorization, like what the Library of Congress has put out (maybe not the entire hierarchy, but only the very upper level(s)
  • Category list (based on MikeDean's list): (updated 2011.08.05)
    • Upper Ontologies
    • Standards (for example, Measurement)
    • Science (for example, Biomedical)
    • Financial
    • Government
    • Cultural (for example, Social Networking, People)
    • Geospatial
    • Commercial
    • Literature
    • Technology
    • Provenance
    • Defense
    • Metadata (for example, OMV, Dublin Core)
    • Process (for example, PSL)
    • Other
  • Getting us to a stage when members can contribute code ... how, ETA?
    • (discussion 2011.05.06):
      • an adopted Architecture & API is definitely crucial, but that's not all
    • All team members are encouraged to mull over how we can get to that state effectively
      • in particular ... how do we make this a "successful" community-driven, open source project!?
    • (discussion 2011.06.03) ...
  • code development on an Eclipse IDE for all?
  • Code repository - considering "git" or github?
  • Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
    • ...

Member activities updates:

  • Review: members and OOR-related activities (2011.11.01)
    • OOR-sandbox status
    • code repository status
    • NCBO
    • NEU
    • Raytheon-BBN
    • Bremen
    • UToronto
    • Ryerson
    • Mathet
    • SOCoP_INTEROP
    • DataONE
    • NeOn (KMi and STL)
    • ONKI
    • KBSI
    • MMI
    • Use Cases
    • Architecture
    • API
    • Gatekeeping
    • production OOR instance
    • SIO
    • Funding
    • ICOM / DERI

Action planning for "soliciting" content (getting people to upload ontologies)

5. Funding progress:

6. Any Other Business:

7. Action items:

8. Schedule Next Meeting & Adjourn:

  • Call adjourned at: 9:51 am PST

--

notes taken by: Peter P. Yim / 2011.12.06-9:54am PST

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.


Resources

  • the OOR-IPR mini-series:
    • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: George Strawn - Chair: Peter P. Yim - Panelists: JamieClark, John Wilbanks, Bruce Perens - ConferenceCall_2010_09_09
    • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: Mark Musen - Panelists: Cameron Ross, Alan Rector, John F. Sowa, Bruce Perens, John Wilbanks, Peter P. Yim - ConferenceCall_2010_09_16
    • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: Leo Obrst - Panelists: Peter P. Yim, Mike Dean, Bruce Perens, JamieClark - ConferenceCall_2010_09_30
  • the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:
    • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: John Bateman & Michael Grüninger - ConferenceCall_2011_10_20
    • 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: Elisa Kendall on "Ontology-Related Metadata Standards" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_11_03
    • 2011_12_15 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-3: "ISO/IEC 24707 Common Logic and IKL" - Co-chairs: Michael Grüninger & John Bateman - ConferenceCall_2011_12_15