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= [[OpenOntologyRepository]]: Architecture & API Workshop-VII - Fri 2011_07_29 =
= [[OpenOntologyRepository]]: OOR Team Conference Call - Fri 2011_08_05 =
 
Topic: Originally planned "'''OOR Architecture & API Specification Development Workshop-VII'''" for this session is again postponed
 
Session Chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]]


=== [[MeetingsCalls|Conference Call]] Details  ===
=== [[MeetingsCalls|Conference Call]] Details  ===


* Date: '''Friday, 29-Jul-2011'''  
* Date: '''Friday, 5-Aug-2011'''  
* Start Time: 6:00am PDT / 9:00am EDT / 3:00pm CEST / 2:00pm BST / 13:00 UTC  
* Start time: 6:00am PDT / 9:00am EDT / 3:00pm CEST / 2:00pm BST / 13:00 UTC  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?month=7&day=29&year=2011&hour=6&min=0&sec=0&p1=224 World Clock]  
** ref: [http://www.timeanddate.com/worldclock/fixedtime.html?iso=20110805T0600&p1=224 World Clock]  
* Expected Call Duration: 1.0~1.5 hours
* Expected Duration: ~1.5 Hours
* Dial-in Number:  
* Dial-in Number:  
** from a '''US telephone (US): +1-218-844-8060''' (domestic long distance cost will apply)  
** from a '''US telephone (US): +1-218-844-8060''' (domestic long distance cost will apply)  
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** callers '''from other countries''' please dial into either one of the US or European numbers  
** callers '''from other countries''' please dial into either one of the US or European numbers  


* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20110729
* '''In-session chat'''-room url: http://webconf.soaphub.org/conf/room/oor_20110805


* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  
* '''RSVP''' '' to [mailto:peter.yim@cim3.com peter.yim@cim3.com] appreciated,'' ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)  


* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_29
* This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05


* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
* Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under [[WikiHomePage#Intellectual_Property_Rights_.28IPR.29_Policy|our prevailing open IPR policy]].  
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* Attended:  
* Attended:  
** [[User:KennethBaclawski|Ken Baclawski]] (co-chair)  
** [[LeoObrst|Leo Obrst]] (chair)  
** [[ToddSchneider|Todd Schneider]] (co-chair)
** [[User:KennethBaclawski|Ken Baclawski]]  
** [[PeterYim|Peter P. Yim]]  
** [[PeterYim|Peter P. Yim]]  
** [[MikeDean|Mike Dean]]
** [[ToddSchneider|Todd Schneider]]


* Expecting:  
* Expecting:  
*   
*   
** ... ''if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.'' ...  
** ''... if you are coming to the session, please add your name above (plus your affiliation, if you aren't already a member of the community) above; or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...''


* Regrets:  
* Regrets:  
** [[TimDarr|Tim Darr]]
** JouniTuominen  
** JouniTuominen  
** [[MikeDean|Mike Dean]]
** ...
** [[LeoObrst|Leo Obrst]]


== Agenda Ideas  ==
== Agenda Ideas  ==


''please insert any additional items below (along with your name for follow-up purposes)''  
''(Please insert your agenda ideas below ...)''  
 
* The specifications to be discussed at the these workshops are the following (not necessarily discussed in this order):
** the OOR Architecture
** the OOR API
** the Organizing Plan
** the default development platform
 
== Abstract  ==


As a result of the two [[OOR]] Architecture and API panel sessions back in Oct & Nov-2010, we have been exposed to a large number of architecture and API candidates for ontology repositories. We have had requirements for the [[OOR]], at least in broad outline form, since the Ontology Summit 2008.  We have been running an [http://oor-01.cim3.net/ontologies OOR sandbox] based on BioPortal. Most recently, we have forked from the [[BioPortal]] code base with the intention of proceeding separately with the development of a reference implementation.
* status update on the OOR Logo quest
 
* Review status: the upgraded OOR_SandBox - http://sandbox.oor.net/ontologies
At this series of meetings, we are going through the process of producing the actual OOR specification. It will be run as a workshop where the straw man proposal will be discussed and modified as needed.
** updating "categories"
 
** soliciting content (ask people to upload their ontologies again)
The various architectures and APIs for ontology repositories presented for consideration are available at '''[[OpenOntologyRepository_Architecture]]'''
* Discussion: the [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_15#nid2VYW newly adopted dual-track OOR approach]  
 
** action planning
Here is the straw man architecture: '''[[OpenOntologyRepository_Architecture/Candidate03]]'''
** scheduling meeting with the NCBO team
 
* OOR or joint OOR events planning, for the Fall and beyond
In addition, there is an API of the core services that was obtained from [[BioPortal]], which is not entirely compatible with the straw man architecture, but furnishes a starting point. This API will also be discussed and modified as needed.
* Revisiting regular meeting time (day-of-week, and starting-time)
 
* ...
Here is the API expressed in WSDL: http://www.ccs.neu.edu/home/kenb/oor/OORService.wsdl
 
Here is the API expressed in Java: http://www.ccs.neu.edu/home/kenb/oor/OORI.java
 
Finally, we need to agree on a plan for completing the development of the specification.
 
Here is the proposed organizing plan: '''[[OpenOntologyRepository_Architecture/GettingOrganized]]'''
 
We encourage all participants to update your candidate contributions to ensure your ideas are known and understood.
 
The following are relevant prior meetings:
 
* Architecture & API Specification Development Workshop-VI - [[OOR/ConferenceCall_2011_06_17]]
* Architecture & API Specification Development Workshop-V - [[OOR/ConferenceCall_2011_05_20]]
* Architecture & API Specification Development Workshop-IV - [[OOR/ConferenceCall_2011_04_22]]
* Architecture & API Specification Development Workshop-III - [[OOR/ConferenceCall_2011_03_25]]
* Architecture & API Specification Development Workshop-II - [[OOR/ConferenceCall_2011_03_11]]
* Architecture & API Specification Development Workshop-I - [[OOR/ConferenceCall_2011_03_04]]
* [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_02_04#nid2MIV 2011.02.04 discussion]  
* 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[MichaelGruninger|Michael Gr&uuml;ninger]] - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, [[EricChan|Eric Chan]] - [[OOR/ConferenceCall_2010_11_19]]
* 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - [[OOR/ConferenceCall_2010_10_15]]


== Agenda & Proceedings  ==
== Agenda & Proceedings  ==


Since we did not have a quorum, it was decided (by the three who were in attendance) to postpone the workshop. We spend some time updating one another on latest relevant developments in the OOR-related world and then adjourned the meeting.  
'''[http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/ Archives]:'''


=== In-session chat-transcript ===
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/OOR-team-conf-call_20110805b.mp3 audio recording of the session] [ 1:24:47 ; mp3 ; 9.70MB ]
* [http://ontolog.cim3.net/file/work/OpenOntologyRepository/MeetingsCalls/OOR-team_chat-transcript_20110805a.txt chat-transcript of this session]


[[PeterYim|Peter P. Yim]]: Welcome to the
1. Meeting called to order:  


[[OpenOntologyRepository]]: Architecture & API Workshop-VII - Fri 2011_07_29
* [[LeoObrst|Leo Obrst]] takes the chair and welcome everyone
* review and adopt agenda
* [[PeterYim|Peter P. Yim]] volunteered to take notes


Topic: "OOR Architecture & API Specification Development Workshop-VII"
2. Roll Call:  


Session Chair: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]]  
* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W19 above]  


Session page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_29
* welcome and intro of new member(s) (as needed)


.  
3. Status Review and Discussion:


[[PeterYim|Peter P. Yim]]: Hi Ken ...  
* '''Review and update our "Most Critical Task(s) At Hand" list'''
** ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH


[[User:KennethBaclawski|Ken Baclawski]]: Good morning Peter
=== Key items for review and discussion today  ===


[[PeterYim|Peter P. Yim]]: good morning
* status update on the OOR Logo quest
** Peter: I'm behind on getting the voting mechanism in place, will work on it within this coming week
** will allow multiple votes from each voter, to be split between their choices
* Review status: the upgraded OOR_SandBox - http://sandbox.oor.net/ontologies
** for now certain behaviors seem strange - Ken and Mike will look into the issues
*** Ken: a lot of it is with the disabling of some hard coded portions (like the swf codes) now
** "visualize" not working now ... Ken will try re-enabling access to U of Victoria (which serves the visualization)
* updating "categories"
** Peter: the ICOM people suggests adding the categories of "standards" and "collaboration" (the latter probably belongs under "Cultural"
** Mike: something like Dublin Core should go under "metadata" - we are adding this category, "process" too
** discussed - see updated "category" list at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W6B
** one can select multiple categories by doing a "ctrl-click" (or "cmd" for Mac users)
** Ken: the software stores "categories" in an OMV ontology, and support a hierarchy of nested categories
*** Mike: there is a GUI interface for adding categories
** All: we probably want to leave it simple (one level) and support "addition of categories" on demand
** Todd: For some categories, e.g., science, subcategories will be needed. Since the provided listing is linear, subcategories could be listed as pairs or triples: Science, Science - Biology, Science-Physics, Science-Physics-Gravitation, etc.
** Leo: we might consider adopting some standard categorization, like what the Library of Congress has put out (maybe not the entire hierarchy, but only the very upper level(s)
* soliciting content (ask people to upload their ontologies again)
** we will put out a note to [oor-forum] when we are ready ... i.e.
*** updated categories are up
*** we clearly know what we'll be doing ref. the dual-track approach (see discussion below)
* Discussion: the [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_15#nid2VYW newly adopted dual-track OOR approach]
** action planning
*** we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
**** [1] this will be a straight forward, and updated [[BioPortal]] code install, with customization only for: the logo, the IP / License statement, categories.
**** [2] this will be the instance we use to continue the current work of further development in Architecture, API, metadata, CL support, etc.
**** consensus: both instances would use the same database (so ontologies uploaded are accessible by both instances, and are obviously "in sync" ... saving us the need to "import" as we ad discussed at the last meeting)
*** Peter: the next things to push is to have "gatekeeping" in place so we can stand up a "production" OOR
** scheduling meeting with the NCBO team
*** candidate dates Sep-20 or 27 Tuesdays 8:30am PT ... Peter will ping Mark Musen et al.
* OOR or joint OOR events planning, for the Fall and beyond
* Revisiting regular meeting time (day-of-week, and starting-time)


[[PeterYim|Peter P. Yim]]: it's the summer, and a lot of people are still away ...
''(unless specifically addressed) items below are from the previous meeting(s) and will be updated as we proceed with this meeting.''  
 
therefore, like the 2011_07_08 session, I suggest we postpone if we do not have 5
 
or more participants ( ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_08#nid2VNQ )
 
anonymous morphed into [[ToddSchneider|Todd Schneider]]
 
[[ToddSchneider|Todd Schneider]]: I concur with Peter's suggestion (and I'm very tired)  
 
[[User:KennethBaclawski|Ken Baclawski]]: The new UI code has been checked in. The sandbox and source code are now consistent.
 
[[User:KennethBaclawski|Ken Baclawski]]: The ontology categories have not yet been updated. This will be handled soon.
 
[[PeterYim|Peter P. Yim]]: OOR sandbox url: http://sandbox.oor.net/ (or http://oor-01.cim3.net/ )
 
[[PeterYim|Peter P. Yim]]: we need to revisit meeting times ... and also find out if we want to meet
 
much at all in August because of the summer
 
[[PeterYim|Peter P. Yim]]: REMINDER: important OOR team meeting next Friday 2011_08_05 ... don't miss it!
 
[[PeterYim|Peter P. Yim]]: -- session ended 6:55am PDT --
 
''The agenda below was not covered during the call!''
 
1. Meeting called to order:
 
* ______ took the chair and welcome everyone
 
* ______ volunteered to keep a record of the proceedings
 
* review and adopt agenda


2. Roll Call & Adoption of last meeting's minutes:  
* Status and action review: upgrade to OOR-sandbox - http://oor-01.cim3.net or http://sandbox.oor.net
** workplan (from previous calls):
*** update codebase to appropriate oor install code
**** customize banner/logo
**** customize IPR statement
**** re-establish categories - ref. [http://ontolog.cim3.net/forum/oor-dev/2011-02/msg00012.html MikeDean's input]
**** other?
*** installation - ETA of updated OOR (v ? )
** prepare vm image
*** vm image available for download - ETA
** [[TimDarr|Tim Darr]] offer to help, some from his team of 8~10 people might get involved, most of the necessary skill sets in java programming, linux sysadmin, vmware, etc. are available
** ''(from 2011.05.06)'' ref input from [[PaulAlexander|Paul Alexander]], [[BioPortal]] is now delivered as an "appliance" - in a vm image
*** the NCBO folks uses the VMware platform for their virtual machine
*** we are currently using (at CIM3) Xen virtual machine for the OOR-sandbox
*** [[MikeDean|Mike Dean]]: there are utilities that help convert between VMware and Xen vm images
** Anyhow, we need to install from the code - code from the semwebcentral oor code repository
** it is suggested that a conf call between us and the Stanford folks (with, say, [[TejasParikh|Tejas Parikh]], [[User:KennethBaclawski|Ken Baclawski]], [[MikeDean|Mike Dean]] with [[PaulAlexander|Paul Alexander]], AlexSkrenchuk, ...) be done ASAP so that we can learn from them they key changes in the recent versions and how the installation is different now [ Ken will arrange ]


* see [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_07_29#nid2VPJ above]
* Category list (based on MikeDean's list): (updated 2011.08.05)
** Upper Ontologies
** Standards (for example, Measurement)
** Science (for example, Biomedical)
** Financial
** Government
** Cultural (for example, Social Networking, People)
** Geospatial
** Commercial
** Literature
** Technology
** Provenance
** Defence
** Metadata (for example, OMV, Dublin Core)
** Process (for example, PSL)
** Other


* ref. proceedings of "Architecture & API Specification Development Workshop-VI" - [[OOR/ConferenceCall_2011_06_17]]
* Status and action review: OOR-dev box - http://oor-02.cim3.net


* review of agenda
* OOR Logo - ref. [[OOR_Logo_Candidates]] - updated process (ref. [http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_05_06#nid2TIL previous process])


3. '''Key items for review and discussion''' today:
* Getting us to a stage when members can contribute code ... how, ETA?
** ''(discussion 2011.05.06):''
*** an adopted Architecture & API is definitely crucial, but that's not all
** All team members are encouraged to mull over how we can get to that state effectively
*** in particular ... how do we make this a "successful" community-driven, open source project!?
** (discussion 2011.06.03)'' ...


* Announcements and Urgent Matters:  
* getting the OOR code repository at semwebcentral started (for real!) - http://oor.semwebcentral.org/
** [[OOR_SandBox]] - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies)
** OOR code-repository and re-assessing the 'fork' (what does that mean?) [MikeDean, [[User:KennethBaclawski|Ken Baclawski]], et al.]
*** 2011.02.18 / [[User:KennethBaclawski|Ken Baclawski]] - have sent question to [[PaulAlexander|Paul Alexander]] about it
** categories - ref. MikeDean's msg - http://ontolog.cim3.net/forum/oor-dev/2011-02/msg00012.html
** 2011.02.18: *'''Important Note'''* - we will start afresh on the OOR sandbox content (i.e. uploaded ontologies) after the update install - everyone who has uploaded ontologies so far should note
*** those who are "using" the OOR sandbox content now, should note down the ontologies they need, and may need to contact the authors to upload them again if they don't show up. (presumably, those content relating to biomedicine, previously federated from [[BioPortal]], will not be there any more, at least not automatically.) Also, links to ontologies or elements within ontologies established previously will no longer be valid after the content gets re-populated - Ken will make a post about this on [oor-forum]
** workplan:
*** update codebase to appropriate oor install code
**** The consensus is that we should use a uniform language in each component to make it easier for people to contribute code and add extensions.
**** customize banner/logo
**** customize IPR statement
**** re-establish categories - ref. [http://ontolog.cim3.net/forum/oor-dev/2011-02/msg00012.html MikeDean's input]
**** other?
*** installation - ETA of updated OOR (v ? )
** prepare vm image
*** vm image available for download - ETA
** [[TimDarr|Tim Darr]] offer to help, some from his team of 8~10 people might get involved, most of the necessary skill sets in java programming, linux sysadmin, vmware, etc. are available


* Review of action item(s) from the previous meeting(s)
* Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
* from 2011.06.17 - [[MichaelGruninger|Michael Gr&uuml;ninger]] will examine the OMV to determine which attributes are required and which are optional.  
** (discussion 2011.06.03)'' ...  
* from 2011.06.17 - [[User:KennethBaclawski|Ken Baclawski]] will send KEEPER (the gatekeeping software) to [[ToddSchneider|Todd Schneider]] who will generate the UML.  


* '''"OOR Architecture & API Specification Development Workshop-VII:"''' ([http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-API-workshop/ Archives])  
* Soliciting content (getting people to upload ontologies)  


''... items below are mostly from the previous workshop, and will be updated as this session progresses.''
* staged events planning
** Architecture & API - VII workshop - Fri 2011.07.29 ... afterwards?
** Metadata - IV workshop - to be scheduled - date?
** Joint IAOA-OOR-Ontolog "Ontology and Standards" mini-series
*** ISO 19763 with [[ElisaKendall|Elisa Kendall]] and [[EvanWallace|Evan Wallace]] - to be scheduled [MichaelGruninger]
*** ISO NP 17347 "Ontology Integration and Interoperability ([[OntoIOp]])" - to be scheduled [JohnBateman]
*** ... more
** updates and plans on [[BioPortal]]; what does that mean for OOR - date? - [KenBaclawski]
** OOR Metadata-IV workshop - ? - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]]
** [[FactGuru|Fact Guru]] incorporation & integration?
** more on SIO ...?


* Gatekeeping specifies the a set of minimal requirements that any ontology within the OOR has to meet. The latter are intended to enable the users of the OOR to find quickly ontologies that fit their needs; the criteria are not supposed to ensure the quality of the ontologies.
* new activities planning
** Each OOR instance declares what ontology languages it supports.
** Every OOR instance MUST support RDFS.
*** This is required because the metadata is expressed in OMV.
*** OMV is written in OWL, but it may be sufficient to require only RDFS. This needs to be investigated.
** Other ontology languages MAY be supported.
** For each metadata attribute, it will be specified whether it is required or optional.
*** It MUST be specified whether the ontology is available (or to be available in the future).
*** The ontology language MUST be specified.
*** Other attributes will be handled offline by [[MichaelGruninger|Michael Gr&uuml;ninger]] based on the OMV specification.
** An ontology must satisfy other requirements depending on the ontology language.
*** Syntax checking is always required.
*** Consistency checking is required with some time limit.


* [ chat transcript of this session]:  
4. '''Member activities updates:'''


'''Consensus, Conclusions & Follow-up Actions:'''  
* Review: members and OOR-related activities
** OOR-sandbox status
** code repository status
** NCBO
** NEU
** Raytheon-BBN
** Bremen
** UToronto
** Ryerson
** Mathet
** [[SOCoP_INTEROP]]
** [[DataONE]]
** [[NeOn]] (KMi and STL)
** ONKI
they'd like to see
** KBSI
** MMI
** Use Cases
** Architecture
** API
** Gatekeeping
** production OOR instance
** SIO
** Funding
** ICOM / DERI


* we are postponing this workshop to Fri 2011-07-29
5. '''Funding progress:'''


4. '''Any Other Business:'''  
6. '''Any Other Business:'''  


5. '''Action items:'''  
7. '''Action items:'''  


6. Schedule Next Meeting & Adjourn:  
8. Schedule Next Meeting & Adjourn:  


* Next Meeting:  
* Next Meeting:  
** 2011_08_05 Friday: regular OOR Team meeting  
** do we break for the rest of August? ... seems like a lot of people are either on vacation or traveling (our friends from Europe, especially)
* we need to discuss if we want to take it slow (maybe just one or at most 2 meetings) in August
*** consensus: let's take a break for the rest of August
** revisiting the regular meeting date/time - Fridays 6:00am PDT still good for everyone?
*** let's move our weekly meetings to Tuesdays 11:30am ET / 8:30am PT / 5:30pm CET ... Peter will send a message to [oor-forum] to see if there are huge
** the next "Architecture & API - VII" workshop (championed by [[User:KennethBaclawski|Ken Baclawski]] & ToddSchneider) is going to be Tue Sep-13
** next regular OOR-team meeting will be (first Tue of Sep.) on Tue 2011.09.06 - 11:30am EDT / 8:30am PDT / 5:30pm CEST / 15:30 UTC - ref. [http://www.timeanddate.com/worldclock/fixedtime.html?iso=20110906T0830&p1=224 worldclock] (note: that Monday is Labor Day in the US)
** ''Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr''
** ref. our doodle poll (see: http://doodle.com/a2snxkpkd8hhxek4 ), looks like we can settle in on two new meeting times - a 6:00am PT (14:00 UTC) and an 8:30am PT (16:30 UTC) (or something in between) ...
** [decision/2011.04.01] we will have an OOR team admin-planning meeting first Friday of every month; and use the other Fridays for workshops to move work forward


* Call adjourned at: 6:55 am PDT  
* Call adjourned at: 7:27am am PDT  


--
--


notes taken by: [[PeterYim|Peter P. Yim]] / 2011.07.29-7:12am PDT
notes taken by: [[PeterYim|Peter P. Yim]] / 2011.08.05-7:34am PDT


All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
Line 247: Line 300:
** 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_05_27]]  
** 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: [[MichaelGruninger|Michael Gr&uuml;ninger]] - [[OOR/ConferenceCall_2011_05_27]]  
** 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_06_17]]  
** 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: [[User:KennethBaclawski|Ken Baclawski]] & [[ToddSchneider|Todd Schneider]] - [[OOR/ConferenceCall_2011_06_17]]  
** 2011_07_29 - Friday: OOR - "Architecture & API Specification Development Workshop-VII" - Chair: [[User:KennethBaclawski|Ken Baclawski]] - [[OOR/ConferenceCall_2011_07_29]]
* the '''OOR-IPR mini-series''':  
* the '''OOR-IPR mini-series''':  
** 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: [[GeorgeStrawn|George Strawn]] - Chair: [[PeterYim|Peter P. Yim]] - Panelists: [[JamieClark]], [[JohnWilbanks|John Wilbanks]], [[BrucePerens|Bruce Perens]] - ConferenceCall_2010_09_09  
** 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: [[GeorgeStrawn|George Strawn]] - Chair: [[PeterYim|Peter P. Yim]] - Panelists: [[JamieClark]], [[JohnWilbanks|John Wilbanks]], [[BrucePerens|Bruce Perens]] - ConferenceCall_2010_09_09  

Latest revision as of 07:32, 9 January 2016

OpenOntologyRepository: OOR Team Conference Call - Fri 2011_08_05

Conference Call Details

  • Date: Friday, 5-Aug-2011
  • Start time: 6:00am PDT / 9:00am EDT / 3:00pm CEST / 2:00pm BST / 13:00 UTC
  • Expected Duration: ~1.5 Hours
  • Dial-in Number:
    • from a US telephone (US): +1-218-844-8060 (domestic long distance cost will apply)
    • When calling in from a phone, use Conference ID: "4389979#"
    • from Europe, call:
      • Austria 0820-4000-1577
      • Belgium 070-35-9992
      • France 0826-100-280
      • Germany 01805-00-7642
      • Ireland 0818-270-037
      • Italy 848-390-179
      • Spain 0902-886-056
      • Switzerland 0848-560-327
      • UK 0844-581-9148
    • callers from other countries please dial into either one of the US or European numbers
  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.

Attendees

  • Expecting:
    • ... if you are coming to the session, please add your name above (plus your affiliation, if you aren't already a member of the community) above; or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...

Agenda Ideas

(Please insert your agenda ideas below ...)

  • status update on the OOR Logo quest
  • Review status: the upgraded OOR_SandBox - http://sandbox.oor.net/ontologies
    • updating "categories"
    • soliciting content (ask people to upload their ontologies again)
  • Discussion: the newly adopted dual-track OOR approach
    • action planning
    • scheduling meeting with the NCBO team
  • OOR or joint OOR events planning, for the Fall and beyond
  • Revisiting regular meeting time (day-of-week, and starting-time)
  • ...

Agenda & Proceedings

Archives:

1. Meeting called to order:

  • Leo Obrst takes the chair and welcome everyone
  • review and adopt agenda
  • Peter P. Yim volunteered to take notes

2. Roll Call:

  • welcome and intro of new member(s) (as needed)

3. Status Review and Discussion:

Key items for review and discussion today

  • status update on the OOR Logo quest
    • Peter: I'm behind on getting the voting mechanism in place, will work on it within this coming week
    • will allow multiple votes from each voter, to be split between their choices
  • Review status: the upgraded OOR_SandBox - http://sandbox.oor.net/ontologies
    • for now certain behaviors seem strange - Ken and Mike will look into the issues
      • Ken: a lot of it is with the disabling of some hard coded portions (like the swf codes) now
    • "visualize" not working now ... Ken will try re-enabling access to U of Victoria (which serves the visualization)
  • updating "categories"
    • Peter: the ICOM people suggests adding the categories of "standards" and "collaboration" (the latter probably belongs under "Cultural"
    • Mike: something like Dublin Core should go under "metadata" - we are adding this category, "process" too
    • discussed - see updated "category" list at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_08_05#nid2W6B
    • one can select multiple categories by doing a "ctrl-click" (or "cmd" for Mac users)
    • Ken: the software stores "categories" in an OMV ontology, and support a hierarchy of nested categories
      • Mike: there is a GUI interface for adding categories
    • All: we probably want to leave it simple (one level) and support "addition of categories" on demand
    • Todd: For some categories, e.g., science, subcategories will be needed. Since the provided listing is linear, subcategories could be listed as pairs or triples: Science, Science - Biology, Science-Physics, Science-Physics-Gravitation, etc.
    • Leo: we might consider adopting some standard categorization, like what the Library of Congress has put out (maybe not the entire hierarchy, but only the very upper level(s)
  • soliciting content (ask people to upload their ontologies again)
    • we will put out a note to [oor-forum] when we are ready ... i.e.
      • updated categories are up
      • we clearly know what we'll be doing ref. the dual-track approach (see discussion below)
  • Discussion: the newly adopted dual-track OOR approach
    • action planning
      • we run (for now) 2 instances - a sandbox instance[1] on the OOR-01 vm, and an experimental instance[2] on the OOR-02 vm
        • [1] this will be a straight forward, and updated BioPortal code install, with customization only for: the logo, the IP / License statement, categories.
        • [2] this will be the instance we use to continue the current work of further development in Architecture, API, metadata, CL support, etc.
        • consensus: both instances would use the same database (so ontologies uploaded are accessible by both instances, and are obviously "in sync" ... saving us the need to "import" as we ad discussed at the last meeting)
      • Peter: the next things to push is to have "gatekeeping" in place so we can stand up a "production" OOR
    • scheduling meeting with the NCBO team
      • candidate dates Sep-20 or 27 Tuesdays 8:30am PT ... Peter will ping Mark Musen et al.
  • OOR or joint OOR events planning, for the Fall and beyond
  • Revisiting regular meeting time (day-of-week, and starting-time)

(unless specifically addressed) items below are from the previous meeting(s) and will be updated as we proceed with this meeting.

  • Status and action review: upgrade to OOR-sandbox - http://oor-01.cim3.net or http://sandbox.oor.net
    • workplan (from previous calls):
      • update codebase to appropriate oor install code
        • customize banner/logo
        • customize IPR statement
        • re-establish categories - ref. MikeDean's input
        • other?
      • installation - ETA of updated OOR (v ? )
    • prepare vm image
      • vm image available for download - ETA
    • Tim Darr offer to help, some from his team of 8~10 people might get involved, most of the necessary skill sets in java programming, linux sysadmin, vmware, etc. are available
    • (from 2011.05.06) ref input from Paul Alexander, BioPortal is now delivered as an "appliance" - in a vm image
      • the NCBO folks uses the VMware platform for their virtual machine
      • we are currently using (at CIM3) Xen virtual machine for the OOR-sandbox
      • Mike Dean: there are utilities that help convert between VMware and Xen vm images
    • Anyhow, we need to install from the code - code from the semwebcentral oor code repository
    • it is suggested that a conf call between us and the Stanford folks (with, say, Tejas Parikh, Ken Baclawski, Mike Dean with Paul Alexander, AlexSkrenchuk, ...) be done ASAP so that we can learn from them they key changes in the recent versions and how the installation is different now [ Ken will arrange ]
  • Category list (based on MikeDean's list): (updated 2011.08.05)
    • Upper Ontologies
    • Standards (for example, Measurement)
    • Science (for example, Biomedical)
    • Financial
    • Government
    • Cultural (for example, Social Networking, People)
    • Geospatial
    • Commercial
    • Literature
    • Technology
    • Provenance
    • Defence
    • Metadata (for example, OMV, Dublin Core)
    • Process (for example, PSL)
    • Other
  • Getting us to a stage when members can contribute code ... how, ETA?
    • (discussion 2011.05.06):
      • an adopted Architecture & API is definitely crucial, but that's not all
    • All team members are encouraged to mull over how we can get to that state effectively
      • in particular ... how do we make this a "successful" community-driven, open source project!?
    • (discussion 2011.06.03) ...
  • getting the OOR code repository at semwebcentral started (for real!) - http://oor.semwebcentral.org/
    • OOR_SandBox - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies)
    • OOR code-repository and re-assessing the 'fork' (what does that mean?) [MikeDean, Ken Baclawski, et al.]
    • categories - ref. MikeDean's msg - http://ontolog.cim3.net/forum/oor-dev/2011-02/msg00012.html
    • 2011.02.18: *Important Note* - we will start afresh on the OOR sandbox content (i.e. uploaded ontologies) after the update install - everyone who has uploaded ontologies so far should note
      • those who are "using" the OOR sandbox content now, should note down the ontologies they need, and may need to contact the authors to upload them again if they don't show up. (presumably, those content relating to biomedicine, previously federated from BioPortal, will not be there any more, at least not automatically.) Also, links to ontologies or elements within ontologies established previously will no longer be valid after the content gets re-populated - Ken will make a post about this on [oor-forum]
    • workplan:
      • update codebase to appropriate oor install code
        • The consensus is that we should use a uniform language in each component to make it easier for people to contribute code and add extensions.
        • customize banner/logo
        • customize IPR statement
        • re-establish categories - ref. MikeDean's input
        • other?
      • installation - ETA of updated OOR (v ? )
    • prepare vm image
      • vm image available for download - ETA
    • Tim Darr offer to help, some from his team of 8~10 people might get involved, most of the necessary skill sets in java programming, linux sysadmin, vmware, etc. are available
  • Getting us to a stage when we can run a OOR-production box ... what's still needed, ETA?
    • (discussion 2011.06.03) ...
  • Soliciting content (getting people to upload ontologies)
  • staged events planning
    • Architecture & API - VII workshop - Fri 2011.07.29 ... afterwards?
    • Metadata - IV workshop - to be scheduled - date?
    • Joint IAOA-OOR-Ontolog "Ontology and Standards" mini-series
      • ISO 19763 with Elisa Kendall and Evan Wallace - to be scheduled [MichaelGruninger]
      • ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" - to be scheduled [JohnBateman]
      • ... more
    • updates and plans on BioPortal; what does that mean for OOR - date? - [KenBaclawski]
    • OOR Metadata-IV workshop - ? - Chair: Michael Grüninger
    • Fact Guru incorporation & integration?
    • more on SIO ...?
  • new activities planning

4. Member activities updates:

  • Review: members and OOR-related activities
    • OOR-sandbox status
    • code repository status
    • NCBO
    • NEU
    • Raytheon-BBN
    • Bremen
    • UToronto
    • Ryerson
    • Mathet
    • SOCoP_INTEROP
    • DataONE
    • NeOn (KMi and STL)
    • ONKI

they'd like to see

    • KBSI
    • MMI
    • Use Cases
    • Architecture
    • API
    • Gatekeeping
    • production OOR instance
    • SIO
    • Funding
    • ICOM / DERI

5. Funding progress:

6. Any Other Business:

7. Action items:

8. Schedule Next Meeting & Adjourn:

  • Next Meeting:
    • do we break for the rest of August? ... seems like a lot of people are either on vacation or traveling (our friends from Europe, especially)
      • consensus: let's take a break for the rest of August
    • revisiting the regular meeting date/time - Fridays 6:00am PDT still good for everyone?
      • let's move our weekly meetings to Tuesdays 11:30am ET / 8:30am PT / 5:30pm CET ... Peter will send a message to [oor-forum] to see if there are huge
    • the next "Architecture & API - VII" workshop (championed by Ken Baclawski & ToddSchneider) is going to be Tue Sep-13
    • next regular OOR-team meeting will be (first Tue of Sep.) on Tue 2011.09.06 - 11:30am EDT / 8:30am PDT / 5:30pm CEST / 15:30 UTC - ref. worldclock (note: that Monday is Labor Day in the US)
    • Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr
    • ref. our doodle poll (see: http://doodle.com/a2snxkpkd8hhxek4 ), looks like we can settle in on two new meeting times - a 6:00am PT (14:00 UTC) and an 8:30am PT (16:30 UTC) (or something in between) ...
    • [decision/2011.04.01] we will have an OOR team admin-planning meeting first Friday of every month; and use the other Fridays for workshops to move work forward
  • Call adjourned at: 7:27am am PDT

--

notes taken by: Peter P. Yim / 2011.08.05-7:34am PDT

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.

Resources



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