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(Last updated at: 2009-07-11 07:55:44 By user: PeterYim)
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* Attended:  
 
* Attended:  
** LeoObrst (chair)  
+
** [[LeoObrst|Leo Obrst]] (chair)  
** PeterYim  
+
** [[PeterYim|Peter P. Yim]]
** KatherineGoodier  
+
** [[KatherineGoodier|Katherine Goodier]]
** MichaelGruninger  
+
** [[MichaelGruninger|Michael Grüninger]]
** DarrenOng  
+
** [[DarrenOng|Darren Ong]]
** NatashaNoy
+
** Natasha Noy
** MikeDean  
+
** [[MikeDean|Mike Dean]]
 
** [[GaryBergCross]]  
 
** [[GaryBergCross]]  
** KenBaclawski
+
** [[User:KennethBaclawski|Ken Baclawski]]
** BartGajderowicz  
+
** [[BartGajderowicz|Bart Gajderowicz]]
** PatCassidy  
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** [[PatCassidy|Pat Cassidy]]
  
 
* Expecting:  
 
* Expecting:  
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* Regrets:  
 
* Regrets:  
** RaviSharma  
+
** [[RaviSharma|Ravi Sharma]]
  
 
== Agenda Ideas  ==
 
== Agenda Ideas  ==
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1. Meeting called to order:  
 
1. Meeting called to order:  
  
* LeoObrst takes the chair and welcomed everyone  
+
* [[LeoObrst|Leo Obrst]] takes the chair and welcomed everyone  
* PeterYim volunteers to take minutes of the meeting  
+
* [[PeterYim|Peter P. Yim]] volunteers to take minutes of the meeting  
  
 
* review and adopt agenda  
 
* review and adopt agenda  
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* Michael: OOR code development issues and discussion  
 
* Michael: OOR code development issues and discussion  
  
* '''Overview on UML diagrams of BioPortal systems'''  
+
* '''Overview on UML diagrams of [[BioPortal]] systems'''  
 
** see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_Architecture#nid1XRD  
 
** see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository_Architecture#nid1XRD  
 
** Todd: UML diagrams generated by "Enterprise Architect" ... will be posting the full set ...  
 
** Todd: UML diagrams generated by "Enterprise Architect" ... will be posting the full set ...  
** Misha: the diagrams are complete; slightly difficult to read now -- some parts not 'relevant' to BioPortal could be removed to make it more readable; with the new update, a lot of changes coming in anyway as an ontology is being used  
+
** Misha: the diagrams are complete; slightly difficult to read now -- some parts not 'relevant' to [[BioPortal]] could be removed to make it more readable; with the new update, a lot of changes coming in anyway as an ontology is being used  
 
*** Misha will help provide a list of the 'relevent' subset of classes  
 
*** Misha will help provide a list of the 'relevent' subset of classes  
 
** Benjamin: MDA?  
 
** Benjamin: MDA?  
 
*** ... Todd: probably stick with UML now, and eventually move to CL?  
 
*** ... Todd: probably stick with UML now, and eventually move to CL?  
 
** Peter / Todd: will add revision level onto the diagrams in the future ... the ones from before, we'll add a date for identification purposes  
 
** Peter / Todd: will add revision level onto the diagrams in the future ... the ones from before, we'll add a date for identification purposes  
** Peter: MishaDorf suggested a full UML diagram and a highlight diagram ... guess Todd is working on them (haven't heard from him yet)  
+
** Peter: [[MishaDorf|Misha Dorf]] suggested a full UML diagram and a highlight diagram ... guess Todd is working on them (haven't heard from him yet)  
  
* Potential for collaboration with the geospatial ontology folks''' - NancyWiegand / [[GaryBergCross]]  
+
* Potential for collaboration with the geospatial ontology folks''' - [[NancyWiegand|Nancy Wiegand]] / [[GaryBergCross]]  
 
** Nancy: intro; SOCoP - submitting a grant proposal to NSF again; possibility of using OOR for their work  
 
** Nancy: intro; SOCoP - submitting a grant proposal to NSF again; possibility of using OOR for their work  
 
** Gary: intro - SOCoP secretary; use of ontology repository for interoperability, social aspect of sharing;  
 
** Gary: intro - SOCoP secretary; use of ontology repository for interoperability, social aspect of sharing;  
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** K: National Geospatial Symposium  
 
** K: National Geospatial Symposium  
  
* KatherineGoodier: presented at the International Data Mnagement Data Governance Conference  
+
* [[KatherineGoodier|Katherine Goodier]]: presented at the International Data Mnagement Data Governance Conference  
 
** introduced and promoted OOR ... good reception from the participants  
 
** introduced and promoted OOR ... good reception from the participants  
 
** ''K please elaborate ...''  
 
** ''K please elaborate ...''  
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* Joint OOR-Ontolog Panel sessions ... on deck:  
 
* Joint OOR-Ontolog Panel sessions ... on deck:  
** panel session on Protege / webProtege / BioPortal / [[CODS]] / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: MarkMusen - date confirmed Thu 16-July-2009  
+
** panel session on Protege / webProtege / [[BioPortal]] / [[CODS]] / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: Mark Musen - date confirmed Thu 16-July-2009  
 
*** panelists will mainly be from Stanford / NCBO  
 
*** panelists will mainly be from Stanford / NCBO  
** panel session on "BioPortal-based ontology repository implementation and development" - chair: NatashaNoy - date confirmed Thu 30-July-2009  
+
** panel session on "BioPortal-based ontology repository implementation and development" - chair: Natasha Noy - date confirmed Thu 30-July-2009  
*** candidate panelists: NCBO folks, MMI folks, OOR- MikeDean, MichaelGruninger, KenBaclawski, AlexGarcia, Bart?, Gary?, ... anyone else?  
+
*** candidate panelists: NCBO folks, MMI folks, OOR- [[MikeDean|Mike Dean]], [[MichaelGruninger|Michael Grüninger]], [[User:KennethBaclawski|Ken Baclawski]], AlexGarcia, Bart?, Gary?, ... anyone else?  
  
 
*   
 
*   
** panel session on "OOR Research Issues" - champion: KenBaclawski - the date needs to be rescheduled  
+
** panel session on "OOR Research Issues" - champion: [[User:KennethBaclawski|Ken Baclawski]] - the date needs to be rescheduled  
*** candidate panelists: Michael, Leo->SuzetteStowtenburg, NatashaNoy, ElisaKendall, ChrisWelty, OOR team members from the EU, (and possibly other who were engaged when the OOR initiative first started ([[OpenOntologyRepository|ref.]]).  
+
*** candidate panelists: Michael, Leo->SuzetteStowtenburg, Natasha Noy, [[ElisaKendall|Elisa Kendall]], [[ChrisWelty|Chris Welty]], OOR team members from the EU, (and possibly other who were engaged when the OOR initiative first started ([[OpenOntologyRepository|ref.]]).  
 
*** Ken will send out a doodle scheduler on this soon!  
 
*** Ken will send out a doodle scheduler on this soon!  
  
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* '''OOR sandbox instance - status review''' - http://oor-01.cim3.net  
 
* '''OOR sandbox instance - status review''' - http://oor-01.cim3.net  
** Benjamin: major update - BioPortal v2.1d - to be released on 12-Jun-2009  
+
** Benjamin: major update - [[BioPortal]] v2.1d - to be released on 12-Jun-2009  
 
*** Natasha/2009.06.12 - slightly delayed, release date could now be a couple of week out  
 
*** Natasha/2009.06.12 - slightly delayed, release date could now be a couple of week out  
 
** Peter: hardware for OOR sandbox-2 (and later the production instance of OOR) will be ready fairly soon (next few days).  
 
** Peter: hardware for OOR sandbox-2 (and later the production instance of OOR) will be ready fairly soon (next few days).  
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* '''OOR development''' activities  
 
* '''OOR development''' activities  
** Michael: running into issues with trying to add FOL/CL upload/download onto the BioPortal codebase  
+
** Michael: running into issues with trying to add FOL/CL upload/download onto the [[BioPortal]] codebase  
 
*** Michael: issues with inherent binary relationship limitation with the existing OWL implementation (based on Protege)  
 
*** Michael: issues with inherent binary relationship limitation with the existing OWL implementation (based on Protege)  
*** Natasha: BioPortal now supports two backends now - the Protege backend and the LexGrid (OBO/Mayo) backend  
+
*** Natasha: [[BioPortal]] now supports two backends now - the Protege backend and the [[LexGrid]] (OBO/Mayo) backend  
*** PatCassidy: translate? ... having a CL backend for Protege would be useful  
+
*** [[PatCassidy|Pat Cassidy]]: translate? ... having a CL backend for Protege would be useful  
 
** Peter: please continue this conversation on the [ppr-dev] list  
 
** Peter: please continue this conversation on the [ppr-dev] list  
 
** K: possibly add another use case for CL  
 
** K: possibly add another use case for CL  
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--
 
--
  
notes taken by: PeterYim / 2009.06.12-9:54am PDT
+
notes taken by: [[PeterYim|Peter P. Yim]] / 2009.06.12-9:54am PDT
  
 
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
 
All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.  
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* Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' discussion archives - http://ontolog.cim3.net/forum/oor-dev/  
 
* Developers mailling list: '''[ [http://ontolog.cim3.net/forum/oor-dev/ oor-dev] ]''' discussion archives - http://ontolog.cim3.net/forum/oor-dev/  
 
* the four '''joint [[OOR]]-OntologySummit2008 Panel Discussions''':  
 
* the four '''joint [[OOR]]-OntologySummit2008 Panel Discussions''':  
** 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28     
+
** 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: [[LeoObrst|Leo Obrst]] & [[FrankOlken|Frank Olken]]; Panelists: [[Bargmeyer|Bruce Bargmeyer]], [[MikeDean|Mike Dean]], Mark Musen, [[FarrukhNajmi|Farrukh Najmi]] & [[PeterYim|Peter P. Yim]] - ConferenceCall_2008_02_28     
** 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, [[JohnLMcCarthy]], KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27     
+
** 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[WilliamBug|William Bug]], [[EvanWallace|Evan Wallace]], [[JohnLMcCarthy]], [[User:KennethBaclawski|Ken Baclawski]], [[PeterBenson|Peter Benson]] & [[RexBrooks|Rex Brooks]] - ConferenceCall_2008_03_27     
** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03     
+
** 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: [[LeoObrst|Leo Obrst]] & [[FabianNeuhaus|Fabian Neuhaus]]; Panelists: [[DougLenat|Doug Lenat]], [[DekeSmith|Deke Smith]], [[MarciaZeng|Marcia Zeng]], [[DeniseBedford|Denise Bedford]], [[PatHayes|Pat Hayes]], [[MalaMehrotra|Mala Mehrotra]] & [[RobRaskin|Rob Raskin]] - ConferenceCall_2008_04_03     
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy &  ElisaKendall - ConferenceCall_2008_04_10     
+
** 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: [[BarrySmith|Barry Smith]] & [[MichaelGruninger|Michael Grüninger]]; Panelists: [[MichaelGruninger|Michael Grüninger]], [[PeterHaase|Peter Haase]], Natasha Noy &  [[ElisaKendall|Elisa Kendall]] - ConferenceCall_2008_04_10     
 
* the '''OOR-dev: Synergies & Gaps panel session''':  
 
* the '''OOR-dev: Synergies & Gaps panel session''':  
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen,  LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22     
+
** 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: [[LeoObrst|Leo Obrst]]; Panelists: [[MikeDean|Mike Dean]], Mark Musen[[LiDing|Li Ding]], [[Bargmeyer|Bruce Bargmeyer]] & [[BillAndersen|Bill Andersen]] - ConferenceCall_2008_08_22     
 
* '''OntologySummit2008''' homepage  
 
* '''OntologySummit2008''' homepage  
 
** '''[[OntologySummit2008_Communique]]'''  
 
** '''[[OntologySummit2008_Communique]]'''  
 
** '''[[OntologySummit2008/FaceToFaceAgenda]]'''  
 
** '''[[OntologySummit2008/FaceToFaceAgenda]]'''  
** The '''[http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt OOR Project] Presentation''' (delivered at the OntologySummit2008 face-to-face workshop)  
+
** The '''[http://ontolog.cim3.net/file/work/OntologySummit2008/2008-04-2829_F2F-workshop/OntologySummit2008_OOR-Presentation--MikeDean-LeoObrst-PeterYim_20080429.ppt OOR Project] Presentation''' (delivered at the [[OntologySummit2008|Ontology Summit 2008]] face-to-face workshop)  
 
* '''[ [http://ontolog.cim3.net/forum/ontology-summit/ ontology-summit] ]''' discussion archives - http://ontolog.cim3.net/forum/ontology-summit/  
 
* '''[ [http://ontolog.cim3.net/forum/ontology-summit/ ontology-summit] ]''' discussion archives - http://ontolog.cim3.net/forum/ontology-summit/  
 
* Our key content pages:  
 
* Our key content pages:  

Latest revision as of 03:24, 9 January 2016

[ ]

Contents

[edit] OpenOntologyRepository: OOR Team Conference Call - Fri 2009-06-12     (1)

OpenOntologyRepository team conference call, Fri 2009.06.12, 1.0~1.5 Hr. call starting 12:00pm EDT / 9:00am PDT / 6:00pm CET / 5:00pm GMT / 17:00 UTC     (1A)

  • RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)     (1B5)
  • Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.     (1B7)

[edit] Attendees     (1D)

  • Expecting:     (1D2)
    • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...     (1D2A)

[edit] Agenda Ideas     (1E)

please insert below (along with your name for follow-up purposes)     (1E1)

[edit] Agenda & Proceedings     (1F)

1. Meeting called to order:     (1F1)

2. Roll Call:     (1F5)

3. Status Review and Discussion:     (1F7)

Suggested topics to be covered:     (1F10)

  • Potential for collaboration with the geospatial ontology folks - Nancy Wiegand / GaryBergCross     (1F16)
    • Nancy: intro; SOCoP - submitting a grant proposal to NSF again; possibility of using OOR for their work     (1F16A)
    • Gary: intro - SOCoP secretary; use of ontology repository for interoperability, social aspect of sharing;     (1F16B)
    • Mike: welcome the collaboration; probably some additional features needed to support geospatial ontologies     (1F16C)
    • K: how much data will be involved .. using data.gov?     (1F16D)
      • Gary: possibly using some USGS data (K: which is already linked to data.gov)     (1F16D1)
    • Nancy: supporting data store ... or just ontologies     (1F16E)
    • Todd: OOR not supposed to provide data store ... but can consider a extension project to work on     (1F16F)
    • Nancy: is the infrastructure stable ... and expected to be around for many years?     (1F16G)
    • Gary: Nancy is the PI; proposal due in July;     (1F16H)
    • Ken: already has a grant ... can share some of the language used ... Nancy will contact Ken     (1F16I)
    • K: National Geospatial Symposium     (1F16J)
  • Joint OOR-Ontolog Panel sessions ... on deck:     (1F19)
    • panel session on Protege / webProtege / BioPortal / CODS / OOR-sandbox ... and how they work together, now and in the near future ... this is more a OOR user and content providers' session (this would go right before Natasha's's OOR implementers and developers' session) - chair: Mark Musen - date confirmed Thu 16-July-2009     (1F19A)
    • panel session on "BioPortal-based ontology repository implementation and development" - chair: Natasha Noy - date confirmed Thu 30-July-2009     (1F19B)
  • OOR Outreach     (1F24)
    • K: My presentation on June 4, 2009 at the International DAMA Data Governance conference on "Cloud Computing" promoted OOR.     (1F24A)

4. New Issues:     (1F29)

5. Any Other Business:     (1F30)

6. Action items:     (1F31)

7. Schedule Next Meeting & Adjourn:     (1F33)

notes taken by: Peter P. Yim / 2009.06.12-9:54am PDT     (1F37)

All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.     (1F38)


[edit] Resources     (1G)


This page has been migrated from the OntologWiki - Click here for original page     (1G20)